| Annotation |
|---|
| Description | jgi|Araly1|947584|scaffold_703813.1 |
| Sequence |
CGAAAAAAAA GAAGATCAAT ATGGGAAACG GTGAAAGAGG ACGACCGACG AAGAAGATGA AGTACGGTGG GAAGGATGAT CAAAAGATGA AGAACATCCA AAACGCTGAA GATTACTATG ATGATGCTGA TGAGGATTCT CGTGATGGTG CAGGAGAGGA GAAGAAGAGA GATTTTACTG AATTGGAGTT GAAGCCAGAT CATGGCAATA GGCCTTTGTG GGCTTGTGCT GATGGAAGGA TTTTCTTGGA GACGTTTTCT CCTCTCTATA AACAAGCTTA TGATTTTCTT ATCGCCATTG CTGAACCCGT TTGCAGGCCT GAGTCAATGC ACGAGTATAG TTTAACCCCA CACTCGTTGT ATGCTGCTGT TTCCGTTGGT CTTGAGACAG AAACTATCAT CTCTGTTTTG AATAAGCTGT CTAAGACTAA GCTACCCAAT GAGATCATTG ATTTTATCCA TGCTTCTACT GCTAATTATG GGAAAGTGAA GCTGGTATTG AAGAAGAATC GGTATTTTAT TGAATCCCCA TTCACGGAGG TATTGAAAAG GCTTCTCAGT GATGATACTA TAAATCGAGC TAGACTTTCT TCTGAGCCAT ATTATGGTGG TGATGGATTT ACGATCGGCA AAACAAGTGG TGAACTTGAA GCAGGACCTG GGGAGCTGTT GAATGAAGCA GAATTGGCAG CAGCTTCGGA AGAGAAAGAA ACTCATTCAT TTGAGGTAGA CCCTGCACAG GTGGAGAATG TGAAGCAGCG TTGCTTACCA AATGCCTTGA ATTACCCTAT GTTAGAGGAA TATGACTTCA GGAACGACAA TGTTAATCCT GATCTTGACA TGGAACTGAA GCCCCATGCA CAACCAAGGC CATACCAGGA AAAAAGTTTG AGCAAAATGT TTGGAAACGG ACGAGCAAGA TCTGGGATTA TAGTGTTGCC TTGTGGTGCT GGTAAATCTC TAGTTGGTGT TTCTGCAGCG GCTCGTATAA AGAAGAGTTG TCTTTGTTTG GCAACGAATG CTGTCTCGGT GGATCAATGG GCCTACCAAT TTAAGTTGTG GTCTACTATA AGAGATGACC AAATATGCCG TTTCACTTCT GATAGTAAAG AACGATTCCG TGGAAATGCT GGTGTTGTTG TGACAACCTA TAATATGATT GCCTTTGGTG GTAAACGATC TGAAGAAGCA GAGAAGATTA TAGAAGAAAT GAGAAACAGA GAGTGGGGGT TACTGCTTAT GGACGAGGTG CATGTGGTTC CAGCTCATAT GTTTAGGAAA GTTATCAGTA TCACAAAATC TCACTGCAAG CTGGGACTTA CAGCCACCCT TGTGAGAGAA GACGAAAAGA TTACAGATTT GAACTTCCTC ATTGGCCCGA AACTATATGA AGCCAATTGG CTAGATTTAG TTAAAGGAGG CTTTATTGCA AATGTTCAAT GTGCTGAAGT ATGGTGTCCT ATGACCAAAG AGTTTTTTGC AGAATATCTG AAGAAAGAGA ACTCCAAGAA AAAACAGGCG CTTTATGTCA TGAACCCTAA CAAGTTCAGA GCCTGTGAAT TTTTGATACG TTTCCATGAA CAACAACGTG GGGATAAAAT CATCGTCTTT GCAGACAATC TTTTTGCACT TACAGAGTAT GCAATGAAAC TCCGGAAACC GATGATTTAT GGTGCAACCA GCCATATCGA ACGAACCAAA ATTCTCGAGG CATTTAAAAC CAGTAAAGAC GTGAACACTG TCTTCTTGTC AAAGGTTGGT GATAACTCTA TAGATATCCC TGAAGCGAAT GTGATTATCC AGATTTCGTC ACATGCTGGT TCTAGACGTC AAGAGGCTCA ACGTTTGGGT CGTATCCTTA GGGCTAAGGG TAAACTTGAA GACAGAATGG CCGGTGGAAA AGAAGAGTAC AATGCATTCT TCTACTCACT TGTTTCTACT GATACACAGG AAATGTATTA TTCAACGAAA AGACAGCAGT TTTTGATCGA CCAAGGTTAT AGCTTCAAGG TAATAACAAG CCTCCCACCT CCGGACGCGG GTTCAAGCTT GGGCTACCAC AGTCAAGAAG AACAGTTGTC TCTTCTCGGA AAGGTGTTGA ATGCTGGAGA CGATTTGGTT GGTTTAGAGC AACTCGAAGA AGACACAGAC GGAATGGCTC TACAAAAGGC GCGACGAAGC ATGGGATCGA TGAGTGCAAT GTCCGGTGCA AAGGGAAGGG TCTACATGGA ATACAACTCA GGCCGTCACA AATCCGGTCA ACAGGTAAAG AAACCTAAAG ACCCAACCCA ACGACACCAA ATGTTCAGAA AACGTTATGG GTGAGACAAG AGAAGCTTTC AAGAGTT |
| Length | 2347 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 20311661.. 20316177 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G41360.1 |
| Description | homolog of Xeroderma pigmentosum complementation group B 2 |
| TAIR curator summary | Encodes XPB2, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies. |
| Alias | [ATXPB2][XPB2][ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 2][homolog of Xeroderma pigmentosum complementation group B 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.16228 |
Ahg472946 | GYF domain-containing protein |
| 3.87298 |
Ahg476195 | MMS ZWEI homologue 2 |
| 4.3589 |
Ahg477535 | RING/FYVE/PHD zinc finger superfamily protein |
| 7.54983 |
Ahg491970 | AFG1-like ATPase family protein |
| 10.4881 |
Ahg482437 | myosin heavy chain-related |
| 11 |
Ahg898458 | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein |
| 14.9666 |
Ahg945657 | transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) |
| 16.7332 |
Ahg490126 | sensitive to freezing 6 |
| 16.9706 |
Ahg897421 | |
| 18 |
Ahg491703 | Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|