Detail



ID : Ahg948527

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|948527|scaffold_800414.1
Sequence
CTTCAACTTT CGCCGGAGAT ATGGATTCAG TGGAAGCGGT GGAGAAGATC CTGAACTACA GTTTCAAGAA CAAGACTCTT CTCAAGGAAG CGATAACGCT ATCTCCTCGA TTCAAGCGGC TTGAGTTCCT CGGCGACTCT GTACTTGAGG TCGCCTTGGC TAATTACATC CACCACGCAT ACCCTAATCT CAAACTCCAG GAGTTGTGTG ACTTGCTAAC TGCTAATGTA AATAACGAGA AGTTCGCTCG TGCCACCGTC AAACACAATC TCTACGAATT CATCATAGGC GAGAAGTCTT CTTCTCCATC TGAAAAGATT AAAGAGTTCT CGGAGGCGGT GAGCAAAGAA GATGTTCCAG TTCCTTATGG TGGATTGGTG GAAGCTCCAA AAGTTCTTGG TGACATTGTA GAGTCAATAG CTGGAGCTGT TTATATTGAT GTGGATTTTG ATGTACAAAG ATTCTGGGAG ATCTGTTGTG TTTGTTTGTT CTTCATTACA TTTGTGTTTC TTATTTCTAT GTTATTAATA AAAAGAGAGG AATTTTTGCA GATCTTCAGG GGTCTTTTGG AGCCAATATA TACACTTGAT GATTTACGGA TGCAACCTAA ACCACCATTT CTTACGCTTT TTCGTTTGGC TGATAAACAC GGCAAGCGAA TTGACTTCAG GTATTCGAAA GATGATCACA GTAAAGAAAA TATTGCTGAG GTTTATCTTG ATGGTATATT TATTGCCTCC GGGTGTACTA AAAGTTTAAG TGTCGCAAAG GTGCTTGCTG CTGAGGAAGC GGTACAGAAG CTGTCAGAAT ATGATGTTGA AATTGAAAAT GTGAAACGGA AGTTGATTGA GATTTGCTCC ACTGAAAAAC TCCGGTTACC GATTGAGTCA TTTTCTTTGC CTACTGCCTC TGAGAACCCT GTAACCGATG AAATGACGCA AGAACAAATG GTTATTGATG AGGATTGTCC ACATGTTGAA CTTGAAGATG TGAAACGGAA GTTAATAGAT ATTTGTTCCA TTGAAAAGCT CCGCTTACCG ACTGAATCAT TTTCTTTGCC TGCCGCCTAT GAGAATCCTT TAACCGATGA AATCAAACAA GAACCTGGAT ACCCGAAAGG GAAGTTACAT AAGATTTGCG CCAAGAATAA GTGGCCATTC CCGATTTACA GAATTGAGGA AGAAAGAGGG CCAAAAAATG AGCAGAAATT TGTTTGTTCA GTTAAGATTG AGATACCAAA TATAGAAGGT TCCTTTCACA TGAAGGGAGA TGCAAAACCA AAGAAAAAGG AAGCAGAAAA CTCCTCAGCC TACCACATGA TAAGAGCCTT GGAATCTTCT CTAATGAGTC TTGTCATTAA TCCGCAAATG CCGAAAGTTT TAGATGAGAA GAAGAATCCA TCTCTCGTCA GCTCAGAAAT GGATTCTGAT TCAGTGAAAG CAGTGGAGAA GATCTTGAAT TACGTTTTCA CAAACAAGAA TCTTCTGAAA GAAGCGCTAA GGCAAACCTC TTCTCTATTC CAGAAGCTTA GGTTCGTTGG CCGGGCAGCT CTAGTTCTCG CCATCACGAA TCACATCTAC CTCAGGTATC CTAATTTCGA ACCCAGGGAG TTGGAACTGC TGCAACGTGG AAATACATGT AACAAATCTT TGGCTCGCGT TGCCGTGAAA CATAATATTC ACCAATTCTT TATAGGCCAA TTCAAGTCGG AGAAAAAGAT TGAAGCGTTC TCAGAGGTGG TGGGCAAAGA GGATGACCCA GTTCCTTCAG ATGGCCGATC GGAGAGAGCC ACAAATGTAC TCTCTGACCT TTTAGAGTCT GTAGCTGGAG CTGTTTATAT TGATATGAAT TTTGATGTTA AAAGACTGTG GGAGAGCTTC AGGGGTCTTT TCGAGCCATT ATATACATTG GATGATTTGC GGCTGCGACC TCAACCAATT CGTACCCTTT CTTGTTTGGG TGATAAAGAC GGCAAGCGTT TCGACTTCAG GTATGAGGAA AAGGGCAGCA ATAGGTATAA AGCTCGCGTA TATCTTGATG ATAAGTTAAT AGCTAGTGGG AAAAAGAAAA ATAGTAGAGA TGACGCAAAG ATGAGCGCTG CTATGGAAGC AGTACGAAAG TTGTCAGAAA GTTTGCCCGT TGAAATAGTT ATGGATAGGC AAGACATTGA AAATGAAGAT GCAAAAGACA AGTTGATTGA GATTTGCAAC AAGCGAAAGT GGCCGAACCC AGTTTACAGT GTTGAGAGTA ACGGAAAATC TAAGGGATAT GTTTGTTCAG CTAAGATTGA GACTCCAACT GAAGAAGGTA CTTTATACGT TAAGGGAGAT AGAAGAAAAC TGAGAAAGAC AGCAGAAACT CCTCAGCCTC CCACTTGTTA AGAGCCTTGG AATTTTCTCT TA 
Length2402
Protein Sequence
Protein Residue
Map Locationscaffold_8: 2288839.. 2292045
Download Sequence
A.thaliana
AGI-codeAT5G45150.1
DescriptionRNAse THREE-like protein 3
TAIR curator summary
Alias[RTL3][RNAse THREE-like protein 3]
Gene coexpression
MR
MR Locus Description
6.7082 Ahg482091 ARM repeat superfamily protein
14.4914 Ahg342216
15.1987 Ahg486936 HEAT repeat-containing protein
16.5529 Ahg490126 sensitive to freezing 6
20.2485 Ahg317312
24 Ahg901754 ENTH/VHS/GAT family protein
24.7386 Ahg495205 Tetratricopeptide repeat (TPR)-like superfamily protein
25.2982 Ahg893775 protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases
27.3496 Ahg495734 Mitochondrial substrate carrier family protein
30.7896 Ahg919535 SIT4 phosphatase-associated family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression