| Annotation |
|---|
| Description | jgi|Araly1|486936|fgenesh2_kg.6__70__AT5G01400.1 |
| Sequence |
ATGGCTTCGT ATTCAAGAGA AAGGCTTGAA GGTCTAGCGA GCTCCGCCAA ATCAGCCACA GAATTGCCTC CGAAACTACA ACGCTTGCGC TATTTGCGCC GGGATTTGCA AAAGGATGAA TCCGTTTTTC CCACCGAGCT GCTTCCTCAC CTTTTCGATC TTCTCTCCGA TCAATTCGGT GCTGTCCGCA AGTTTGTCGC CGAGATCCTT GGTGAAGTTG GATTGAAATA TGTGGAATTA TTACCTGAAA TAGTACCGCT TTTAATTAAG TCTCTCGAAG ATGAGACACC AGCTGTGGCG AGGCAGGTCA TTGCTTGTGG AGTTGATTTA TTCCGTTCCA CCCTCGAAAG AGTGGCAGTT CAGGGTTTGC ATTCTAGTGA GTTGAATGAT CTTCTTGAAT CTTCGTGGAC ATGGGTGATT AAGTTCAAGG ATGAAATATG CTCATTGGCT TTCAAGCAAG GAAATAGTGG TGTAAAATTA TGCGCTATGA AATTTGTGGA AGCGCTTATT CTCTTGTATA CTCCTCATGA AGGAATTGAA GCAGATTTTA ATATATCTAT TCTCCGTGGT GGTCATCCTG TTTTGAAAAT TGGAGACTTG TCGATTGAGG CCAGCCAGAA ATTGGGTTTA CTGCTTGATC AGCTTAGGCA CCCTGCAGCA AAATCTCTAA ATAGCTCGAC GATTATTGTT CTCATTAATA GTCTTTCATC AGTTGCAAAG AAACGTCCTG CATACTGTGG ACGAATTCTA CCTGTTCTAC TGAGCTTGGA TCCCCTAAGC TTTCTCAAAG GAGTGCATGC TGCAGCAGCA AATCTTGCCT TGAAGACTGT ATTTCTCTCC TGCTTGAAAT GTAAACATCC CGCTGCCGCA CCGGACTGGT TGATCAGTGC TCTTAAAGAG ATAGAAGGTG GAGGTCGGGC AGCCAAAGCG AAAGATCTCT TTTACAAGAC TAACGGAAGC ATTCAGGACA AAGACAGTGT AGAGGATACC AAGGTATCAG TGGAAGAGAA TCCTCTCTGT GCAAGTTCTG ATGTTGCAGA AAGTAACTTA AGTAGGAAAA GATCTGGATC AGAATACAGT ATTGATCTAA ATGGAGATGC TTCGGATGGA AAACGTGCAA GAATAACACC TTCTGTGTCA GAAGAATCCA CTGACGGATT AAATGGTAAT GATGGTGGCT CTCTACCTCG GGTTGCTTCT ACCTCGACCG GACCAAGTGA TAGCAGAGGA GTGAGTGATA CTGGACCTGC TCAGCAGCTA GTTGGTTTGT TTGGAACCTT GGTTTCTCAG GGTGAAAAAG CAATTGGATC TTTGGAGATT CTTATTTCAA GTATTTCGGC GGATTTACTT ACTGATGTTG TGATGGCTAA TATGCATAAT ATTCCACCAA ATGGTTATTC TTATGCTGAT GGCACCGATG AGTTGGTGAT GAACATGTGT ATAGTTGGCA GTGATGCACA AATTAAATAT CCACCATCAT TTATAGCGGG TGTCCTTTCA CTGTCAACCG CATTCCCACC AATTGCTGCC CTGATAAATC CTCACAATGA AGATGAGGAA GTCTATTCTG TTCATGTGGA CCAGCAAATG TTTCCAGCTG AAGATGCAAG AACTCCACCT GGCTTATTAG CTTCCTCTTT TCCAGAAAAT GAAGAAAGCA ATACTGTGTC TCTACAAAAT GTGCATTACA TAAGGAAAAG AGAAAGTGGA ATACCTGGAC TGGAATCTTC TGCTCAACAT GATGTATCAG GAGCCCTTGT TACTAATGTA TTGAGTTCTA CGAATATGGA GGCTGCAAGC AAAAATCAAA ATGCGAGTTT CAGTGGAAAA CTTCTTGTCG ATGTAATTCC CTCAATGTCT GTGGATAAGT CGGAGGAATT TAGTCCAAAG GCGGTTGGCA CAGGTTCTAC CAGCTTGGTT TTGTCAACGG CAACTTCAGT TGCTTCTGCG CCTCAGTTTG TCTTGCCTAA GATATCAGCA CCTGTTGTCG ACCTTTCTGA TGAAGAGAAA GACAGTTTAC AAAAGCTGGT GTTTTTGCGC ATTGTTGAAG CATATAAGCA AATATCAATG TCTGGTGGCT CACAACTCCG CTTTTCTCTT CTTGCTCATT TAGGAGTTGA GTTTCCTTCA GAGTTAGACC CTTGGAAAAT ATTACAGGAG CACGTTCTCT CAGATTATTT GAATCATGAG GGACATGAGT TGACTGTGCG GGTTCTTTAC AGGCTATACG GGGAGGCAGA AGCAGAACAA GATTTCTTCT CTTCAACTAC TGCTGCATCG GCATATGAAA GTTTCTTGCT GACTGTGGCT GAAGCACTAA GAGATTCTTT TCCACCATCT GACAAATCTT TAAGTAAATT GCTCGGAGAT TCTCCACATC TGCCAAAATC AGTTCTGAAG CTGTTGGAAT CGTTTTGTTG TCCTGGAAGT AGTGAAGAAG TTGAGAAGGA TTTACCATAT GGAGACCGTG TTACTCAAGG TCTCAGTGCT GTTTGGAGCC TGATTTTAAT GAGACCTGGA ATCCGGAATG ACTGCCTGAA TATAGCTTTG CAGAGTGCTG TTCATCACTT GGAAGAGATT CGCATGAAAG CAATCCGCCT GGTGGCAAAC AAGCTCTATT CTTTATCATT CATTACACAA CAGATTGAGG AATTTGCAAA GGATAGGCTA TTTTCCGTCG TAAGTTGCAT TACTTTAGAG AAAGGAGATG CTGAAACACG GATTGATGAT TGTAATAAGA AGGATCTTGA TCTGAAAAGT CCACCAAATA AACCGCAGCA CGTTATCAGT GGTACGGGTA TGGAGACGCC CTCCGAAGCA ACATCATCAA CTTCAGTTAC TGAAGCTCAA CGCTGCTTGT CACTCTATTT TGCTCTCTGT ACAAAGGTCT TGGGAATTTT TACCATTCTT CGACTAATGA TTAATCTAGC CTTCATTATT TACAAGAGTG CATCAGATCC AGTTAAGCAG GCTATTCATC TTCAAATCCC AATACTAGTT CGTACTATGG GCTCATCCTC TGAGCTTCTT AAAATTATAG CAGACCCACC AACTGGGAGT GAGAACCTTC TAATGCAGGT TCTTCAAACC CTCACCGAGG GGCCCACGCC TTCTTCAGAA TTGATACTTA CTATACGAAA GTTGTTTGAT ACAAGAATAA AGGATGTAGA AATTCTTTTC CCAATTTTGC CATTCCTGCC TAGAGACAAT GTTCTACGTA TTTTTCCCCA TATGGTGAAT CTTCCTATGG AGAAATTTCA AGTTGCACTC TCTCGTGTGC TGCAGGGATC ATCTCAGTCT GGCCCAGTGC TTTCTCCATC TGAAGTTTTA ATTGCTATCC ATGGCATTGA CCCAGCAAGA GATGGAATAC CACTTAAACA GGTCACAGAT GCATGCAATA CCTGTTTTGC ACAGAGGCAG ACATTCACTC AACAGGTTTT AGCCGGCGTT CTGAATCAAC TGGTCCAGCA AATTCCACTG CCAATGTTAT TCATGCGTAC AGTTTTACAA GCTATCGGTG CTTTTCCAGC TCTGTCGGAC TTCATCCTGG AGATCCTTTC TCGTCTCGTT AGCAAACAGA TATGGAAAAA TCCGAAACTG TGGGTTGGGT TTTTGAAATG TACACAGACA ACACAGCCTC AATCATACAA GGTCTTACTA CAGCTTCCTC CACCTCAACT GGGAAATGCA TTGACTAAAA TCCCGGCCTT AAGAGCTCCG CTAACCGCAC ATGCCAGCCA GCCAGAGATT CAGTCTTCAC TTCCAAGGTC TACATTGGCT GTTCTTGGAC TTGTCCCTGA TTCTCAAGGA ACACAAACGA GCCAAGTGCA AGCGAATGAG ACACAAAGGA GTCAGGAACA GCAGCAAGAG CAAGCAAGCG AGTCACAGCA AACGAGCCAG TCTCAGCAAG TTTCTGTGCC ATTGAGTGAC TCTCAAGTAG GTCACCAGGA ACCCAGTCAG GTAGTTGCCA GTCAGTCTCA AAGCAATCCC ATAGGTCCGG GCCTGTCTGA AATGAGTCAG TCTCAGAACA GTCCCATGGA TACGGGCCGG TCTGAAATGA GTCAGCCTCA GAACAGTCCC ATAGATACGG GCCGTCCTGA AATGAGTCAG CCTCAGAACA GTCCCATAGA TACGGGACGA TCTGAAATGA GTGAGTCTCA GAGCAGTCCC ATAGGTGCGG GCCGGTCTGA GATGGGTCAG TCGCAAAGCA GTCCTATTGG TACTGGCCAG TCTGATTTGA GTCAGACCCC TCAAGTGTCA GACTCGAGTG CTCCAGTACC AACGAGCCAT ACTCAGACAT CAGATCCTCA AGCGTCAAGG CAGACACAGC GTGATGGTGA TGATGATGAT GATGAGAAGA TAGACGACAC AGCAACCTCG GGAAACGAGG TGACAGAAAT TGAGAAATCA AAAGAATCTT CTGAAGAAGA TGAAGAAGAA GAGTGAGTGT GACATTCTGT GACGTGAGAG AGAAGGAGAG ATTCTTTGAG ATTTGTGGGA GAAGAAGAGG GAATGAAGCA AATGAATCAG GACAGGAAAT CTTCGTTCGG TGTATTATAA TATTTTCCCA AATGAATTTT GTAGAATTTT GTTAGATATA TCTTTGTTAA GACTTTAATA AAAGTTT |
| Length | 4627 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 252270.. 261017 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G01400.1 |
| Description | HEAT repeat-containing protein |
| TAIR curator summary | Encodes a Symplekin/Pta1 homologue which would have the potential to interact with either ESP1 or AtCstF64. |
| Alias | [ESP4][ENHANCED SILENCING PHENOTYPE 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg940499 | leucine-rich repeat transmembrane protein kinase family protein |
| 2.82843 |
Ahg933960 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 3 |
Ahg474701 | TBP-ASSOCIATED FACTOR 6B |
| 4.69042 |
Ahg487745 | NAC domain containing protein 82 |
| 4.89898 |
Ahg475472 | alpha-1 tubulin |
| 5.09902 |
Ahg483801 | inner membrane protein OXA1-like |
| 5.2915 |
Ahg490794 | Protein of unknown function (DUF3550/UPF0682) |
| 7.07107 |
Ahg477535 | RING/FYVE/PHD zinc finger superfamily protein |
| 8 |
Ahg487239 | HhH-GPD base excision DNA repair family protein |
| 8 |
Ahg491583 | exocyst subunit exo70 family protein G1 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|