| Annotation |
|---|
| Description | jgi|Araly1|950808|scaffold_802695.1 |
| Sequence |
TTTGATTCAC TGAGAAAAAA ATGGCGACTG GAGTATTGCC AGCTCCGGTC TCCGGGGTTA AGATCCCGGA TTCGAAACTC GGGTTTGGTA AAAGCATGAA TCTTGCGAGG ATTTGTGATG TTAGGAGTCT AAGATCTGCT AGAAGAAGAG TTTCGGTTAT CCGGAATTCA AACCAAGGCT CTGATTTAGC CGAGCTTCAA CCTGCATCAG AAGGAAGCCC TCTCTTAGTG CCAAGACAGA AATATTGTGA ATCATTGCAT AAGACGGTGA GAAGGAAGAC TCGTACTGTT ATGGTTGGAA ATGTCGCCCT TGGAAGTGAA CATCCGATAA GGATTCAAAC GATGACTACT TCGGATACAA AAGATGTTGC TGGAACTGTT GATGAGGTTA TGAGGATAGC GGATAGAGGA GCTGATATTG TGAGGATAAC TGTTCAAGGG AAGAAAGAGG CGGATGCGTG CTTCGAAATA AAAGATAAAC TTGTTCAGCT TAATTACAAT ATACCGCTGG TTGCAGATAT TCATTTTGCC CCTGCTGTAG CCTTACGAGT CGCTGAATGC TTTGACAAGA TCCGTGTCAA CCCCGGAAAT TTTGCGGACA GGCGGGCCCA GTTTGAGACG ATAGAATATA CAGAAGATGA ATATCAGAAA GAACTCCAGC ATATCGAGCA GGTCTTCACT CCTTTGGTTG AGAAATGCAA AAAGTACGGG AGAGCAATGC GTATAGGGAC AAATCATGGA AGTCTTTCTG ATCGTATCAT GAGTTATTAC GGGGATTCTC CGCGAGGAAT GGTTGAATCT GCGTTTGAGT TTGCAAGGAT ATGTCGGAAA TTAGACTATC ACAACTTTGT TTTCTCAATG AAAGCGAGCA ACCCAGTGAT CATGGTCCAG GCGTACCGTT TACTTGTGGC TGAGATGTAT GTTCATGGAT GGGATTATCC TTTGCATTTG GGAGTTACTG AGGCAGGAGA AGGCGAAGAT GGACGGATGA AATCTGCGAT TGGAATTGGG ACGCTTCTTC AGGACGGGCT CGGTGACACA ATAAGAGTTT CACTGACGGA GCCACCAGAA GAGGAGATAG ATCCCTGCAG GCGATTGGCC AACCTGGGGA CAAAAGCTGC CGAACTTCAA CAAGGCGTTG CACCGTTTGA AGAAAAGCAT AGGCATTACT TTGATTTTCA GCGTCGGACG GGTGATCTAC CTGTACAAAA AGAGGGAGAA GAGGTTGATT ACAGAAATGT CCTTCACCGT GATGGTTCTG TTCTGATGTC GATTTCTTTG GATCAACTAA AGACACCTGA ACTCCTCTAC AGATCGCTCG CTACAAAACT TGTCGTGGGT ATGCCATTCA AGGATCTGGC AACTGTTGAT TCAATCTTAT TAAGAGAGCT ACCGCCTGTA GATGATCATG TGGCTCGTTT GGCTCTAAAA CGGTTGATTG ATGTCAGTAT GGGAGTTATA GCACCGTTAT CGGAGCAACT AACAAAGCCA TTTCCCAATG CAATGGTTCT TGTCAACCTC AAGGAACTAT CTGGTGGCGC TTACAAGCTT CTCCCTGAAG GTACACGCTT GGTTGTCTCT CTACGAGGCG ATGAGCCTTA TGAGGAGCTT GAAATACTCA AAAACATCGA TGCTACTATA ATTCTCCATG ATGTACCCTT CACTGAAGAC AAAGTTAGCA GAGTACATGC AGCTCGGAGG CTATTCGAGT TCCTATCCGA GAATTCAGTT AACTTTCCTG TTATTCACCA CATAAATTTC CCAACCGGAA TCCACAGAGA CGAATTGGTG ATTCATGCAG GGACTTATGC TGGAGCCCTT CTTGTGGATG GACTCGGTGA TGGCGTAATG CTCGAAGCAC CTGACCAAGA TTTTGATTTT CTTCGGAATA CTTCCTTCAA CTTATTACAA GGCTGCAGAA TGCGTAACAC TAAGACGGAA TATGTATCGT GCCCGTCTTG TGGAAGAACG CTTTTCGACT TGCAAGAAAT CAGCGCCGAG ATTCGAGAAA AGACTTCACA TTTACCTGGC GTTTCGATCG CAATCATGGG TTGCATTGTG AATGGACCAG GAGAAATGGC AGATGCTGAT TTCGGATATG TAGGTGGTTC TCCTGGAAAA ATCGATCTTT ATGTTGGAAA GACGGTGGTG AAGCGTGGGA TAGCTATGAC GGAGGCAACA GATGCTCTGA TCGGTCTGAT CAAAGAACAT GGTCGTTGGG TCGACCCGCC TGTGGCTGAT GAGTAGATTT CAAAACGGTG GAGATG |
| Length | 2266 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 18385818.. 18389755 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G60600.1 |
| Description | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase |
| TAIR curator summary | Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP+ reductase. |
| Alias | [CLB4][CSB3][GCPE][HDS][ISPG][CHLOROPLAST BIOGENESIS 4][CONSTITUTIVE SUBTILISIN 3][4-hydroxy-3-methylbut-2-enyl diphosphate synthase] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg933590 | photosystem II subunit P-2 |
| 5.19615 |
Ahg492423 | chloroplast heat shock protein 70-1 |
| 5.2915 |
Ahg929397 | post-illumination chlorophyll fluorescence increase |
| 6.63325 |
Ahg926998 | chloroplastic drought-induced stress protein of 32 kD |
| 11.5758 |
Ahg473173 | Metallo-hydrolase/oxidoreductase superfamily protein |
| 11.8322 |
Ahg941792 | Alanyl-tRNA synthetase, class IIc |
| 12.49 |
Ahg487310 | Protein kinase superfamily protein |
| 13.4907 |
Ahg487193 | glutamate synthase 1 |
| 13.6382 |
Ahg492320 | peptide met sulfoxide reductase 4 |
| 14.7648 |
Ahg482422 | Transketolase family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|