| Annotation |
|---|
| Description | jgi|Araly1|951066|scaffold_802953.1 |
| Sequence |
ATTCGATTTT TAAAAGACTG ATGATGACAT TAAACTCACT ATCTCCAGCT GAATCCAAAG CTTTTTCTTT CTTTGATACC TCCAGGTTCA ATCCAATCCC TCAAATCTCA GGTGGGTTTA GTTTGAGGAG GAGGAATCAA GGGAGAGATT TTGGAAAAGG TGTGAAGTGT TCAGTGAAAG TGGAGCAGCA GCAACCTCCT CCAGCATGGC CTGGGAGAGC TGTTCCTGAG GCGCCTCGTC AATCTTGGGA TGGACCTAAA CCCATCTCTA TTGTTGGATC TACTGGTTCT ATTGGCACTC AGACATTGGA TATTGTGGCT GAGAATCCTG ACAAATTTAG AGTTGTGGCT CTAGCTGCTG GTTCGAATGT TACTCTACTT GCTGATCAGG TAAGGAGATT TAAGCCTGCG TTGGTTGCTG TTAGAAACGA GTCATTGATC AATGAGCTTA AAGAGGCTTT AGCGGATCTG GACTATAAAC CCGAGATAAT TCCAGGGGAG CAAGGAGTGA TTGAGGTTGC CCGACACCCT GAAGCTGTAA CTGTTGTTAC CGGAATAGTA GGTTGTGCGG GACTTAAGCC TACGGTTGCT GCAATTGAAG CAGGAAAAGA CATTGCTCTT GCAAACAAAG AGACATTAAT CGCAGGTGGT CCTTTCGTGC TTCCGCTTGC CAACAAACAT AATGTTAAGA TTCTTCCGGC AGATTCAGAA CATTCTGCCA TATTTCAGTG TATTCAAGGT TTGCCTGAAG GTGCTCTACG CAAGATAATC TTGACTGCAT CTGGTGGAGC TTTTAGGGAT TGGCCTGTTG AAAAGCTCAA GGAAGTTAAG GTAGCGGATG CGTTGAAGCA TCCAAACTGG AACATGGGAA AGAAAATCAC TGTGGACTCA GCTACGCTTT TCAATAAGGG TCTTGAGGTC ATCGAAGCTC ATTATTTGTT TGGAGCTGAG TATGACGATA TAGAGATTGT CATTCATCCT CAAAGTATCA TACACTCCAT GATCGAAACA CAGGATTCAT CTGTGCTTGC TCAATTGGGT TGGCCTGATA TGCGTTTACC GATCCTCTAC ACCATGTCAT GGCCTGATAG AGTTCCTTGT TCTGAAGTAA CTTGGCCAAG ACTAGACCTT TGCAAACTCG GTTCATTGAC TTTCAAGAAA CCAGACAATG TGAAATACCC ATCCATGGAT CTTGCTTATG CTGCTGGACG AGCTGGAGGC ACAATGACTG GAGTTCTCAG CGCCGCCAAT GAGAAAGCCG TTGAAATGTT CATTGATGAA AAGATAAGCT ATTTAGATAT CTTCAAGGTT GTGGAATTAA CATGCGATAA ACATCGAAAC GAGTTGGTAA CATCACCGTC TCTTGAAGAG ATTGTTCACT ATGACTTGTG GGCGCGTGAA TATGCCGCGA ATGTGCAGCT TTCTTCTGGT GCGAGGCCAG TCCATGCCTG ACGAATTGGT TGTTGGAAGA A |
| Length | 1471 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 19440315.. 19443322 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G62790.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
| TAIR curator summary | 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded by a single-copy gene. Arabidopsis DXR is targeted to plastids and localizes into chloroplasts of leaf cells. DXR knockout or strongly silenced lines have a seedling lethal, albino phenotype. Transgenic, partially silenced lines expressing 35S:DXR have a variegated phenotype. |
| Alias | [DXR][PDE129][1-deoxy-D-xylulose 5-phosphate reductoisomerase][PIGMENT-DEFECTIVE EMBRYO 129] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg942027 | Protein of unknown function (DUF3411) |
| 2 |
Ahg487264 | pentatricopeptide (PPR) repeat-containing protein |
| 3.31662 |
Ahg479023 | Single hybrid motif superfamily protein |
| 9.16515 |
Ahg937058 | |
| 9.38083 |
Ahg495846 | |
| 10.6771 |
Ahg927990 | Ankyrin repeat family protein |
| 11.0905 |
Ahg930466 | putative type 1 membrane protein |
| 11.6619 |
Ahg947070 | Uncharacterized protein family (UPF0016) |
| 12.49 |
Ahg496639 | conserved peptide upstream open reading frame 40 |
| 12.9615 |
Ahg921284 | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
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| Growth Chamber expression |
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