Detail



ID : Ahg322564

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|322564|fgenesh1_pm.C_scaffold_5000108
Sequence
ATGATACGAT TACGGACACT GATTGAGAAA AATCGAAGCG AAAGGAGAAG AAAGATCGAT TCTTCTTCTT TCGATTCGTT GCCCGAGGGA TGCATTTCAA ACATAATCTC TTTCACAAGT CCTGAAGACG CTTGCGTCGC TGCTACGGTT TCGAAGATCT TTGAATCGGC GATGAAATCA GATATCGTAT GGGAGAAGTT TCTTCCGGAA GATTATGAAT CTCTGATTCC TCCTTCGCGA GTTTTCTCAT CGAAGAAGGA ACTCTATTTC TCTCTCTGCG ACGATCCTCT CCTAATCGAC GATGGCAAAT TGAGCGTTTG GTTGGAGAAA GCGAGTGGGA AGAGGTGTGT AATGTATTCT GCGACTGCAA TGATGAATTT CTCAAGCATG GGAGATATTT TTCAACGTTT CGAGTGGATT CCAATTCCTG AAGCTAGGTT TGAAACAGTA GCGCAGCTTC GCGAAGCTTG TAAGTTTAAG TTCAATTGCA GAATGAATAC TCGTGTCCTT TCTCCAAGAA CTCGTTACTC GGTCTACATT GTGTTCAAGA AAGCGGATAC TTGTTGTGGT TTTAAGGCTG TGTCTTTAGA GGCTGTAGTT GGGGTGGTGG GACAGGATTC TTTTAGAAGA TTCATATGCT TTGATACGCA TGCGAAGGGG AAGTTTCGAA AGGGGAAAGT GGTTGTGAAA CCAGAGTTGA GAGAAGATGG GTGGATGGAG GTAGAGCTTG GGGAATTCTT CAATGAAGGA GGATGGGATA GTGATGAAAT TGAGATGACT ACTGTAGAGC GTAAATGCCC CCAGCAGAAG CGTGGTTTGG TCATTCTAGG AATTGAAATT CGTCCTACGA AAATCCTCGA GGAGTTTTCG GGTCGTTGCT TGTGAGGCCA AAAGAAAGCT TTAGTTCTAG AGATTGAAAA TTTATGA 
Length927
Protein Sequence
Protein Residue
Map Locationscaffold_5: 777376.. 778579
Download Sequence
A.thaliana
AGI-codeAT2G02350.1
DescriptionSKP1 interacting partner 3
TAIR curator summaryencodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber.
Alias[AtPP2-B9][SKIP3][Phloem protein 2-B9][SKP1 interacting partner 3]
Gene coexpression
MR
MR Locus Description
42.4617 Ahg351609 Protein of Unknown Function (DUF239)
51.303 Ahg478549 Jojoba acyl CoA reductase-related male sterility protein
70.0785 Ahg486927 cation exchanger 4
76.642 Ahg481782 RmlC-like cupins superfamily protein
87.59 Ahg921560 FBD, F-box and Leucine Rich Repeat domains containing protein
95.8906 Ahg351608 Protein of Unknown Function (DUF239)
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression