| Annotation |
|---|
| Description | jgi|Araly1|329840|fgenesh1_pm.C_scaffold_7002067 |
| Sequence |
ATGGGATCAT CAATATCTCC TCTCACTCGA GAATATATAT GTGAAGCTGA AACCGCGGAG AAAGCTAAAT TGTTGAAAGA AGAGGTGAGG AAGACACTAG GTGAAATTGA AGGTTCTATT GAGCAGCTGG AAATGATCGA TTCTTTGCAA AGACTCGGAA TCTCATATCA CTATAAACAC GAAATCCATG ATATTTTGAA AAACATTCAT GACCAACGCG GCGAAATTGA GAGGGAATCA CAAGATCTTC ATGCTACATC ACTTGAATTT TTTCTCCTAA GGCAACATGG TTTTGATGTC TCGCAAGATG TTTTTGACGT TTTCATAAGT GAGGCCGGGG TATTCAGAAA AACTCTACGC AGCGATATCA AAGGGTTACT CTCTCTATAC GAAGCTTCTT ATTTTTCAAA GGGTTCGGAG TTTAAACTCA AGGACACTAG AATTTATGCA AACAAGCGAT TAAGTGAGTT TGTCGCGGAA AGTAGCAAAA CTATTTGCAG AGAAGATGAA ACTTATATAT TTGAGATGGT GAAACGAGCA CTAGATACGC CGTACCATTG GAGCATACGA AGATTAGAAG CAAGATGGTA CATAAATGTG TACGAACACA AGCATGAAAT GAACCCTCTC TTGTTTGAGT TTGCAGCAAC TGATTTCAAC ATGTTACAAG CTAATCATCA AGAAGAACTT AAACTAGTTT CTAGTTGGTG GAACAGCACA GGACTTATGA AACAACTTGA TTTCGTGAGA GACCGAATCA CAGAGAGTTA TTTTTGGACC ATTGGAATAT TTTACGAGCC AGAGTTTAAA TACTGCCGAA TGATACTCAC CAAAATATTC ATGTTAATTG CGATTATGGA TGATATCTAC GATATCTATG GTACATTAGA GGAGCTCGAG ATTTTCACAA ATGTTGTCGA AAAATGGGAT GTGAACCATG TTGAAAGACT TCCCAACTAC ATGAGAATTT GTTTTCTTTT TCTATACAAT GAGATCAACC AAATAGGATA CGATGTTCTG AGAGACAAAG GACTTAACGT TATCCCTTAC CTCAAACAAG TTTGGACGGA TCTATTTAAA ACGTTCCTGA TGGAAGCAAA GTGGTACAAA ACTGAACACA GACCAAGTTT CGAAGAATAT ATGCAAAACG GTGTGATCTC GAGTTCTGTC CCAACGATAC TGCTCCACCT TTTCTCCGTC CTACCCGACC ACATCTCCGA CCAAACCCTA ACCGATGTTT CCAAAAACCA CTCTGTCGTC CGGAGCTGTG CCACCATTCT CCGTCTCGCT AATGATCTCG CCACCTCAAC GGATGAGATG GCAAGAGGAG ATTCCCCAAA GTCAGTCCAA TGTTACATGT ATGAGACAAG AGCCAGTGAG GAAGAGGCAC GGGGACACAT GCAAAGTATG ATCAGCGACT CTTGGGACGT CATAAACTCC GATTTTAAAA CGGAACACAC TTCTTCTCTT CCTCGTGGTT TCGTGGCAGC CGCCGCAAAT CTTAACCGCG TGGTACAGTG TATCTACCAG CACGGTGATG GCCACGGCAG CCCCGAAAAG ACCAAGACCG TTGATTATAT CCAATCCGTA CTCTTCAATC CCGTTCCGTT ATAG |
| Length | 1614 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 11107794.. 11111115 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G16730.1 |
| Description | terpene synthase 02 |
| TAIR curator summary | In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides downstream of the start codon leading to a frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present. |
| Alias | [TPS02][terpene synthase 02] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.74166 |
Ahg486481 | Glycosyl hydrolase superfamily protein |
| 5.2915 |
Ahg313807 | alternative oxidase 1D |
| 8.30662 |
Ahg929930 | |
| 9.53939 |
Ahg482777 | |
| 10.3923 |
Ahg918583 | Auxin efflux carrier family protein |
| 10.9545 |
Ahg472780 | FAD-binding Berberine family protein |
| 11.6189 |
Ahg491067 | Rhodanese/Cell cycle control phosphatase superfamily protein |
| 12.9615 |
Ahg479668 | 1-deoxy-D-xylulose 5-phosphate synthase 1 |
| 13.1909 |
Ahg329886 | Glycosyl hydrolase superfamily protein |
| 13.2665 |
Ahg476458 | kunitz trypsin inhibitor 1 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|