Detail


ID : Ahg479668

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|479668|fgenesh2_kg.3__2369__AT3G21500.2
Sequence
ATTAATACTA CCACTATATA TACGTTGGAA TGTCATATCA AACACAGATT ATCAAATTCT CTCAAAATGG CTCTCTCCGT ATTTGCCTTT CCTTCTTACA TATATAGAAA TCCTTCAATT AAATATTGCA AACCTACTTC TATGTCTTCT ACAAAAACTT CAAAAGTAAG AGCAACAATT GCAGAGAAAG GTGAATATTA TTCAAGTAGA CCACCAACTC CTTTACTGGA CACAATCAAC CATCCAATGC ACATGAAGAA TCTGTCCATC AAAGAACTCA AAGTTCTTTC TGACGAGTTG AGATCTGATG TTATCTTCAA TGTTTCAAAA ACTGGAGGAC ACTTGGGTTC GAATCTGGGT GTTGTTGAGC TCACTGTGGC CCTTCATTAC ATCTTCAATA CTCCTCAAGA TAAGATCCTT TGGGATGTTG GTCATCAGTC TTATCCTCAC AAGATTCTAA CGGGAAGAAG AGGAAAGATG AAGACAATAA GGCAGACCGA TGGCCTCTCC GGCTACACCA AGAGAAGAGA GAGTGAGCAT GACTCCTTTG GCACCGGGCA CAGTTCTACC ACAATATCTG CAGGCTTAGG GATGGCTGTG GGCAGGGATT TGAAGGGGAT GAACAACAGC GTGGTTGCGG TTATAGGCGA TGGCGCAATG ACAGCTGGAC AAGCTTATGA AGCTATGAAC AATGCTGGCT ACTTAGACTC TGACATGATT GTGATTCTCA ACGACAATAA ACAAGTCTCT TTGCCTACTG CTAACTTTGA TGGACCAACT CCACCTGTTG GAGCTTTGAG CTGTGCTCTA AGTAGTGGGA CTGGTTCAAC TCTGTTTGAA GAACTTGGTC TCCATTATGT TGGTCCAGTT GATGGGCACA ACATAGATGA TCTGGTCTCC ATTCTTGAAA AAGTAAAAAG CACCAAATCC ATAGGACCGG TTCTTATTCA TGTCGTGACT GAGAAAGGTC GCGGATATCC CTACGCAGAG GGAGCTGATG ACAAGTATCA TGGAGTTTTA AAATTCGAAC CAGCAACAGG TAAACAGTTC AAAAACATTT CCAAGACTCA GTTTTACACT TCCTGTTTTG TGGAGGCCTT GACTGCGGAA GCAGAGGCAG ACAAAGATAT TGTTGCCATT CATGCAGCCA CGGGAGGTGG AACAATGTTG AATCTCTTCG AGAACCGCTT TCCTACAAGG TGTTTCGATG TTGGCATAGC AGAACAACAT GCAGTTACTT TCGCTGCTGG TCTTGCTTGC GAAGGACTTA GGCCCTTTTG TACAATCTAC TCTTCTTTCA TGCAACGGGC TTATGATCAA GTTGTACATG ATGTTGATCT ACAGAAACTA CCTGTGAGGT TTGCAATCGA TAGAGCTGGA CTTGTTGGAG CTGATGGTCC AACACATTGT GGAGCATTTG ATGTGACGTT TATGGCATGT CTTCCAAACA TGATAGTTAT GGCTCCATCT GATGAAGCAG AGCTTTTTAA CATGGTTGCA ACCGCTGCAG CTATTGATGA CCGTCCTTCT TGCTTTCGAT ATCATAGAGG AAACGGTATC GGTGTTTCAC TTCCTCCAGG CAACAAAGGT GTCCCTCTTC AGATTGGGAA AGGTAGGATA CTAAGGGAAG GCGAGAGGGT TGCGCTTTTG GGCTACGGAT CAGCAGTTCA AAGATGTTTA GAGACTGCTT CTATGCTTAG CGAACGCGGA TTAAAGATAA CTGTAGCGGA TGCAAGATTT TGTAAGCCAT TAGATGTTGC TCTCATTCGT AGCTTAGCTA AATCACACGA GGTTTTAATC ACGGTTGAAG AAGGTTCGAT TGGAGGATTT GGATCGCATG TGGTACAATT TCTTGCACTT GATGGTCTTC TTGACGGAAA GCTCAAGTGG AGGCCAATGG TACTACCTGA CCGGTATATC GAACACGGAT CACCAATGGA TCAACTGGCT GAAGCTGGCC TCACAGCGTC TCATATTGCA GCCACAGCAC TTAACTTAAT GGGAACACCT AGAGAAGCCT TGTTTTGGGA GTAATGAGAT CTCCAACAGG TTCTTCAATT CTGTAAGAGA GTGTATCGAG AAAACCCACT TAGAAGAAGT ATATATTGTA GTTATTTAAC ATCTTGAATA AATTCATTCA CATTCAAGAA TGAGTTTGTG TGTGTAGTGC TTATATCTCG TTTCAACTAG GCTAAGAAAT AGAACAAATG GCATTGGCGT TTTCATC
Length2227
Protein Sequence
Protein Residue
Map Locationscaffold_3: 8990595.. 8994002
Download Sequence
A.thaliana
AGI-codeAT3G21500.2
Description1-deoxy-D-xylulose 5-phosphate synthase 1
TAIR curator summaryEncodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.
Alias[DXL1][DXPS1][DXS2][DXS-like 1][1-deoxy-D-xylulose 5-phosphate synthase 1][1-deoxy-D-xylulose 5-phosphate (DXP) synthase 2]
Gene coexpression
MR
MR Locus Description
3.4641 Ahg924719 Plant invertase/pectin methylesterase inhibitor superfamily protein
10.247 Ahg920607 senescence-related gene 1
10.3923 Ahg918583 Auxin efflux carrier family protein
12.9615 Ahg329840 terpene synthase 02
13.1909 Ahg929930
13.7113 Ahg483895 myb domain protein 2
14.7309 Ahg493878 GDSL lipase 1
19.2354 Ahg313807 alternative oxidase 1D
21.4243 Ahg900448
21.4476 Ahg478837 GDSL-motif lipase 4
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression