Detail



ID : Ahg330097

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|330097|fgenesh1_pm.C_scaffold_7002324
Sequence
ATGTTCTTCC TAGACTCACA GCAGCAAGAC TCCGATCATC TCCTCCATGA ATCTATGGCG GATCCAGACC ATCAATCTCT GTCCCCGCAA TGCGCGAACG GCCACCGATC CACAATTTCT CTCCGCGCCG ACCAAGGCGG CACATTCTGC TTCATCTGCT TCTCCAATCT CGTCTCCGAC CAACGCGTCC CCACCGTCCA CGTCTCCTAC GCGCTTCACC AGCTCTCAAT TGCTCTCTCT GAACCTATCT TCCTCCGAAC CCTACTCTCC TCTCATATCC ACTTTCTCGT ATCGCCTCTC GTCCACGCTC TCTCTTCGAT TGATGATGCT CCAATCGCAA TCCAGATTAT GGATATGATC TCTCTTCTCT GTTCCGCTGT GGAATCTTCA ATCGGCGAGG ATTTTGTGGA GAGAATCTCC GATCAGCTCT CTTCTGGTGC TTTGGGTTGG AGCCGAAGAC AGCTCCATAT GCTTCACTGC TTTGGCGTTC TGATGAATTG TGAGAATATA GACGTCAATT CCCATATCAG AGATAAAGAA GCTCTTGTTT GCCAACTCGT TGAAGGTCTT CAATTACCAA GTGAGGAGAT CCGCGGTGAA ATCCTTTTCG TTCTGTACAA ATTTTCTGCT CTACAGTTCA CAGAACAAAA TGTTGATGGC ATTGAAGTTC TTTCTTCATT GTGTCCTAAG CTCTTATGCC TATCTTTGGA GGCTCTTGCA AAGACACAGA GAGATGATGT TCGCTTGAAT TGTGTAGCCC TTTTGACCAT CTTGGCCCAG CAAGGTCTTT TAGCAAATTC ACATACAAAT AATTTCAGCA GCATGAGCTT GGATGAAGTT GATGATGACC CTATGCAGAC AGCTGAGACT CTAGTCGCCA GGCCTTGTTT AAATGTCTTA TTTGCTGAGG CAATTAAAGG GCCGTTGCTT TCCACTGACA GTGAGGTGCA AATAAGAACC CTTGATCTTA TCTTCCACTA CGTATCCCAA GAGAGTAAAC CAAGCAAACA GATTCAAGTT ATGGTAGACG AAAATGTTGC TGATTATATA TTTGAGATAC TGCGGTTATC AGAATGTAAA GATCAGGTCA TCAACTCATG CCTCAGAGTT CTTGATCTAT TTTTCTTAGC CGAGCAATCC TTTCGGAAGA GACTTGTTAT TGGGTTTCCT TCAGTCATCC AAGTGCTTCA CTATGTAGGT GAAGTTCCTT GCCATCCTTT TCAAATCCAG ACACTGAAGC TTATTTCGAG CTGTATTTCA GATTTCCCTG GGATTGCTTC TAGTACTCAA GTTCAGGAAA TTGCTCTGGT TCTGAAAAGG ATGCTTGAAA GATATTATTC TCAGGAGATG GGATTATTTC CGGATGCATT TGCGATTATC TGCTCAGTCT TTGTTTCCCT TATGAAAACT CCATCTTTTG CGGAGACTGC AGATGTGTTA ACATCATTGC AAGAATCCTT GAGACATGCT ATTTTGGCCT CTCTTAGTCC CCCTGAGAAA GATTCAACCC AGATATTGCA TGCAGTCTAC TTACTCAATG AAGTATATGC ATATTGTACT GCACCAACAT CCATAAACAA GACCAGTTGC ATTGAGTTAA GACACTGTGT TATAGACGTG TGTGCATCAC ATCTATTGCC GTGGTTTCTT GCTGATGTCA ACGAGGTCAA TGAGGAAGCA ACTCTTGGCA TAATGGAAAC TTTCCATTCT ATTCTGCTAC AGAATTCAGA TATTCAAGCC AAGGAGTTTG CAGAGATGCT TGTTTCAGCA GATTGGTTCA GCTTTTCATT TGGATGTCTT GGAAACTTTT GTACGGCTAA CATGAAACAG AGGATATATT TGATGCTCAG TTCCCTTGTT GATGTTCTTC TCGAACAGAA AACGGCGTCA CATATCAGAG ATGCTCTTCA TTGTCTTCCT TCGGATCCAC AAGATTTGCT GTTTTTGCTC GGGCAAGACA GTTCCAATAA TCAAGAATTG GCTTCTTGCC AGTCCGCAGC TCTGCTGATT TTCCATACCA GTTGGATGTA CAATGACAGG CTTGCAGATG ATAAGCTGGT TTTAGCTTCT TTGGAGCAAT ACATTATTCT AAACAGGACA AGTTTAATAT GTGCATTCTC TGATTCTCCA GTTATGCTCA ACCTAGTGAA TCTGTATGGT CTTTGCAGGA GTCTTCAAAA CGAGAGATAC CAGGTATCCT ACAGTCTAGA GGCTGAGAGA ATACTCTTCC ATCTATTAAA CGAATATGAG TGGGACTTGG GTTCCAGTAA TATTCATCTA GAATCTCTGA AGTGGCTTTT TCAACAAGAA AGTATCAGCA AAAGTTTAAC TTACCAGATC CAAAAGATCT CCCGGACCAA CTTAATTGGA AATGAAGTTC ACAATGTATA TGGAGATGGC AGACAGAGAT CGCTCACATA TTGGTTTGCA AAGTTGATAT CAGAAGAAGA CAACTATGCC GCAACTCTTC TGGTTAACTT GTTGACACAA CTCGCAGAGA AGGAAGAGCA AGAGAATGAT GTTATCTCGA TTTTAAATCT AATTACCACA ATTGTTTCTA TATTCCCAAC TGCCTCCAAC CATTTTTCTA TGATTGGCAT TGGCAATGTA GTTCATAGAC TCGTTTCTGG TATTAATAAC TCAGCCTTGC GAACATCGTT TAAAACACTC CTTCTGCTAG TATTCAACAT TTTAGCTTGT GTGCAACCTG GAGTGCTAAT GATTGATGAA TCATGGGATG CTGTATCGAT AAAGTTGTTA AATTTTTTGA GCTTGCGAGA CACTGCCATA AAACAGAACC ATGAAGATGT GATGGTGATT GGCATTCTTT CATTGGTTCT GTACCACTCT TCAGATGGAG CACTTGTGGA AGCTTCGCGA AGTATACTAC TGAATTCGTA CTTGGTATCA GCAATCAACA CTGTGGTTGA TGTAGCTTGC TCAAAGGGTC CAGCACTGAC TCAGTATCAG GATGAAACTG ACATCGGGGA GGCTCTAGCA TTCACGTTAT CTCTCTATTT TTTCTCATTA AGAAGTTTGC AGATTGTTCT AGCTGGAGCA GTAGATTGGC AAACTTTCTT TGGCACGTCG ACCAGCCTAG AAACACTACC CGTAGTCTGC ATCCATTGCC ATAATTTGTG CAGGTTGATG CATTTTGGAG CACCACAAAT CAAGCTTATC GCCTCTTATT GTCTTTTGGA GTTGCTCACT GGACTATCAG AACAGATTGA CATAAAAAAA GAGCAACCAC GGTGTTCATC AAGTTACCTG AAATCAATGA AGACTGTTTT AGGTGGTCTT GTATTCTGTG ATGACATAAG AGTAGCGACA AACTCTGCGC TTTGTCTGTC CATGATTTTA GGTTGGGAAG ACATGGAAGG AAGAACAGAG ATGCTTAAGA CCAGCTCATG GTACAGGTTT ATTGCAGAAG AAATGTCAGT TTCCTTGGCC ATGCCTTGTT CAGCATTTAG TGCATACGTG AACCACCACA AGCCAGCAGT CTATCTAACC GTTGCCATGC TAAGACTCAA GAACAAGCCA GTGTGGCTGG GAACTGTTTT TGATGAGTCT TGCATCTCTA GCATGATTCA AAATCTGAAT GGGATAAATA TCAGCAGAGA GATTGTAATA TTGTTTCGAG AACTTATGCA GGCTGAGCTA TTGAATTCCC AGCAAGTGAC CAAGTTGAAT CGTGCATTCC AGGAATGTAG AAAACAAATG CACAGGAATG GAACTCGAGA TGAGGCAGTT GAAGAACAAG TGCAACTGAA AATTTCCTCA ATCCATGATC ATAGTGAGCT CTGCAACTAT CTTGTTCATT TGATGGTATC TAATTCATTT GGACACACAA GTGGAAGCCA AACATAAACC CAGAAGAAGA AACAGATTCT CGACGAAATG GAACAATTCT TCGAGCTATT ATCAGGGAAT GATGTAACTG ATACAAGACC GTGTAAGGTC TATACAAGAA GAAACAAGAC AAATGCAAAC AGAGAGAATC GTGTAGAAGG GGAGACTTGA 
Length4020
Protein Sequence
Protein Residue
Map Locationscaffold_7: 13373181.. 13378451
Download Sequence
A.thaliana
AGI-codeAT4G14180.1
Descriptionputative recombination initiation defect 1
TAIR curator summaryEncodes a protein that is involved in meiotic recombination and is required for meiotic double strand break repair.
Alias[AtPRD1][PRD1][putative recombination initiation defect 1]
Gene coexpression
MR
MR Locus Description
17.0294 Ahg891366
27.0924 Ahg942558
34.6266 Ahg496560 IBR domain-containing protein
70.1783 Ahg948899
71.3723 Ahg326529
73.2188 Ahg924514 Ubiquitin-associated (UBA) protein
77.3628 Ahg344503
86.3018 Ahg349490 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
87.5614 Ahg901120 isopropyl malate isomerase large subunit 1
91.3017 Ahg906234
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression