Detail



ID : Ahg331346

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|331346|fgenesh1_pm.C_scaffold_8000689
Sequence
ATGGCGGATC TAAAGAATCT CTTCCTCATC ACGAAACATC CATCAACAAC ACAAATCTTC TTTACGTCTC TCTTCTTCAT CTCTCTCTTC CTCCTCTCAT CTTCTTCTCT ATCCGACTTC TCTCCATCGC TCATCGTCTC TAGCTTCACC TCTCGTCTTC TCACAGCAGC AAACTTCTTC TCTTCTCCTT CTTCTTATTC TTCTTCTTCC TCTGCTTCAG ACACAACTAT GTTTCTCTCC TCTGTTTCTC CCAGAAGAAT CAACGAGCCA AAGATTGATT CGGAGACTAA AGAACTCACT TCTTGCGACA TTTTTGATGG AACTTGGGTC TTCGACGATT CTGAACCGGT TTATCTTCCT GGTTATTGTC CTTTCATTGA AGATAAATTC AATTGCTTCA AAAATGGTCG ACCTGATTCG GGTTTTCTCC GTCATCGATG GCAACCTCAT GGATGCTCGA TTCCAAGATT CGATGGGAAG AAGATGCTGA AGATTCTGAG AGGGAAAAGA GTTGTTTTTG TTGGAGATTC ATTGAATAGA AACATGTGGG AGTCTCTGGT TTGTTCACTT AGGTCAACAT TGGAAGACAA AAACAGAGTT TCTAGGGTTT CTGGAAAACA GAGTAATCTT CATAACGAAG GCTTTTACGG TTTCAGATTC AAAGACTTTG AATGCTCTAT TGACTTCATC AAATCACCAT TCCTCGTTCA AGAATCAGAA GTTTTAGATG TATACGGCAA GAGAAGAGAG ACACTGAGAC TCGATATGAT TCAACGATCG ATTAAGAAGA TACACAAAAA CGCAGACATT GTTATATTTA ACACTGGTCA CTGGTGGACT CACCAGAAAA CCTATGAAGG GAAAGGTTAT TTCCAGGAAG GAAATCGAGT TTACGAAAGA TTAGAAGTGA AAGAAGCTTA CACAAAAGCT CTTCATACAT GGGCTGATTG GGTTGATTCC AGTATCAACA GTACTAAAAC CAGAGTCTTC TTCGTTGGTT ATTCCTCTTC ACATTTTAGA AAAGGGGCGT GGAACAACGG AGGACAATGC GATGGAGAAA CAAGACCGAT ACAGAACGAG ACGTACACCG GAGTGTATCC ATGGATGATG AAAGTTGTGG AATCGGTGAT CTCGGATATG AAAACGCCTG TGTTTTACAT GAATATTACG AAGATGACTT GGTACAGAAC CGATGGTCAT CCGTCGATTT ACAGACAACC TGCCGACCCC CGAGGAAGTA CTCCTGCAGC TGGAATGTTC CAAGATTGTA GCCATTGGTG CTTACCTGGA GTTCCTGATT CATGGAATCA GCTTCTCTAC GCTACTTTGC TAGTTTCACA TGGTTCCTTG CCTGACAAGT CACTTGGAAG TCTCTTGTAA 
Length1380
Protein Sequence
Protein Residue
Map Locationscaffold_8: 12286575.. 12288269
Download Sequence
A.thaliana
AGI-codeAT5G49340.1
DescriptionTRICHOME BIREFRINGENCE-LIKE 4
TAIR curator summaryEncodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Alias[TBL4][TRICHOME BIREFRINGENCE-LIKE 4]
Gene coexpression
MR
MR Locus Description
9.79796 Ahg355720
16.6132 Ahg950383 Auxin efflux carrier family protein
17.6635 Ahg937171 lanosterol synthase 1
21.0713 Ahg947612
21.1424 Ahg343909
26.8142 Ahg479123 F-box and associated interaction domains-containing protein
26.9444 Ahg943733 ferric reduction oxidase 2
27.4955 Ahg321134
29.5466 Ahg943986 Protein of unknown function (DUF607)
32.0312 Ahg351609 Protein of Unknown Function (DUF239)
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression