Detail



ID : Ahg335514

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|335514|fgenesh1_pg.C_scaffold_1002079
Sequence
ATGGCGGCGG CGGTTGCGAC GGGTGTCGCA CCGGCAACAA TGGTTGATCA AATTCCGAGT CCGACGGCTC AGACTTCGGT TCAGGTTCCG GTTTCGATAC CTGCTCCATC TCCGGCAGCG GTTGCCGATC AAACACATCC CAACTCGTCG CTCTATGCGG GAGATTTGGA CCCAAAAGTG ACTGAAGCGC ATCTGTTCGA TTTGTTCAAG CATGTCGCTA ATGTTGTTTC GGTAAGAGTT TGTCGTGACC AGAATCGTCG ATCCTTGGGA TATGCCTACA TCAATTTCAG TAACCCTAAT GATGCTTACC GAGCAATGGA GGCTTTGAAC TACACTCCCC TCTTTGAAAG GCCCATTCGG ATCATGCTCT CGAACCGTGA TCCGAGCACA CGATTGAGCG GCAAAGGAAA CATTTTCATC AAAAACCTTG ATGCTTCAAT CGACAACAAG GCATTGTTCG AGACGTTTTC AAGTTTTGGA ACCATCCTCT CATGCAAAGT TGCAATGGAC GTGACTGGCC GGTCCAAGGG GTATGGATTT GTCCAGTTTG AGAAGGAGGA ATCGGCTCAA GCTGCAATTG ACAAGCTAAA CGGGATGCTA ATGAACGACA AGCAAGTCTT TGTGGGACAC TTCATCAGAC GTCAAGAACG TGCTCGTGAT GAAAACACCC CTACACCGCG TTTCACTAAT GTGTACGTCA AGAATCTCCC CAAGGAGATT GGTGAGGACG AGCTACGAAA AACGTTTGGT AAATTTGGAG TGATATCGAG CGCGGTTGTA ATGAGGGACC AGAGCGGGAA CTCGAGGTGT TTTGGGTTTG TGAACTTTGA GTGTACTGAA GCAGCGGCTT CCGCGGTTGA GAAGATGAAT GGAATTAGCT TAGGGGATGA TGTGTTGTAC GTTGGGAGGG CTCAAAAGAA GTCTGAGAGA GAAGAAGAGT TAAGAAGAAA GTTTGAGTAG GAGAGGATAA ACCGGTTTGA GAAATCACAA GGAGCGAATC TGTATTTGAA GAATCTTGAT GATAGCGTCG ATGATGAGAA ACTCAAGGAG ATGTTCTCTG AATATGGAAA TGTAACATCT TCCAAGGTTA TGCTTAATCC ACAAGGATTG AGCAGAGGAT TTGGTTTTGT TGCTTATTCT AATCCTGAAG AAGCTTTAAG AGCACTGAGT GAAATGAATG GGAAGATGAT AGGAAAGAAA CCACTATACA TAGCTCTTGC GCAGCGCAAA GAAGATAGAC GAGCACACTT ACAAGCGCTA TTTTCACAGA TAAGAGCACC AGGGCCAATG TCGGGGTTCC ATCACCCGCC AGGTGGACCA ATGCCGGGTC CACCTCAGCA CATGTACGTA GGCCAGAACG GAGCAAGTCT GGTCCCGTCC CAGCCCATTG GATATGGATT CCAGCCTCAG TTCATGCCCG GGATGCGTCC AGGTTCTGGC CCGGGCAACT TCGTCATGCC TTATCCTCTT CAGAGACAAC CTCAAACCGG TCCTCGTATG GGATTCAGGC GTGGTGCTAC TAACATGCAA CACCACATCC AACAACAACA ACTTATGAAC CGTAACCCGA CCCCGGGAAT GAGATATATG AACGGTGAGG GTAACGGGAG GAACGGAATG GATTCGAGTG TTCCGCAAGG AATCTTGCCT CCAATCATGC CTTTGCCAAT AGATGCTTCT TCAATTTCTC ACCAGAAAGC TCCTCTCCTT CCAATATCTA AGCTCACTTC TTCTTTAGCT TCTGCTAGTC CAGCTGATCG CACTCGGATG CTTGGAGAGC AACTTTACCC ACTTGTGGAA AGGCACGAAC CACTTCACGT GGCTAAAGTC ACAGGAATGT TGTTGGAGAT GGATCAAGCC GAGATCCTGC ACTTGATGGA GTCACCAGAG GCACTCAAGT CTAAAGTATC TGAGGCTTTG GATGTTCTCA GGCTATCTGT TGATCCACCT GATCATGAGC TTGGTTTCTC TACCACCTGA 
Length1980
Protein Sequence
Protein Residue
Map Locationscaffold_1: 9566953.. 9570192
Download Sequence
A.thaliana
AGI-codeAT1G22760.1
Descriptionpoly(A) binding protein 3
TAIR curator summaryPutative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs.
Alias[PAB3][poly(A) binding protein 3]
Gene coexpression
MR
MR Locus Description
4.12311 Ahg929770 Protein kinase superfamily protein
7.2111 Ahg352619
14.0712 Ahg917939 floral meristem identity control protein LEAFY (LFY)
16.2788 Ahg355720
19.1311 Ahg335836 EF hand calcium-binding protein family
20.347 Ahg323966
21 Ahg334832 HCO3- transporter family
25.9808 Ahg480825 spermidine hydroxycinnamoyl transferase
30.3315 Ahg351609 Protein of Unknown Function (DUF239)
30.9677 Ahg925744
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression