Detail



ID : Ahg340891

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|340891|fgenesh1_pg.C_scaffold_3000654
Sequence
ATGTTCGTCT TGCTTGATCG TGGAGTTGAT AGAATCTGCT ATGTTCAGTT CCCTCAGAGG TTTGAAGTTA TTGACCCAAA TGATCGTTAT GCAAACCACA ACACTGTCTT CTTTGATGTT AGTATGAGAG CTTTGGATGC ACTTCAAGGT CCAATGTATG TGGGAACTGG CTGTATCTTC CGAAGAACAG CTCTCTACGG GTTTAGCCCG CCGAGAGCAA CTGAACATCA TGGCTGGCTT GGAAGAAGAA AGAATACAAC GAAGAAGAGA ATGATGATGG AGATATTGAA TCTCTACTTC TCCCAAAGAG ATTTGGTAAC AAACTCTTTC GTTGCTGAAT ACCAAGGGAG ACTCTTACAA GACTTGCAAG GCAAAGGCAA GAACAGTAGA ACAGCTGGCT CACTTGCTGT CCCACGTGAA CCGCTTGATG CAACCACTGT AGCTGAAGCA ATCAGTGTGA TATCTTGCTT CTACGAGGAT AAAACTGAAT GGGGCAAAAG AGTTGGATGG ATCTATGGAT CAGTGACTGA AGATGAACGT GATGGTTACT GGAAGATGAT GCAGAAGTAT ATAGGGTCTG ATGTTACATC TATGGTGACT CTTCCTGTGA TCATTTTTGA ACCTATGACA ATGTTGCAGA AAATGGCTGA GTTGATGGAA TACTCGCATC TGGTGGACAT GGCTGACAAA ACTGAAGATC CTTACATGAG TATGGTATAT GCATCATCAT GGGCTATCTC TGTGTATTAT GCTTACCAGC GTACCTGGAA GCCGTTCAAT CCAATTCTCG GTGAGACTTA CGAGATGACT AATCATAATG GGATCAATTT TATAGCTGAT CTGCAGGTTT GCCATCACCC ACCAATGAGT GCTGGTCACG CAAAAAACGA GCATTTCGCT TACGATTGCA CTTCAAAACT GAAAACGAAA TTCTTATAG 
Length939
Protein Sequence
Protein Residue
Map Locationscaffold_3: 2747395.. 2748964
Download Sequence
A.thaliana
AGI-codeAT5G02100.1
DescriptionOxysterol-binding family protein
TAIR curator summaryEncodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.
Alias[ORP3A][UNE18][OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3A][UNFERTILIZED EMBRYO SAC 18]
Gene coexpression
MR
MR Locus Description
18.7083 Ahg333621 glutathione S-transferase (class phi) 5
25.5734 Ahg494134 S-protein homologue 8
27.3496 Ahg945916 F-box family protein with a domain of unknown function (DUF295)
32.4346 Ahg349127
52.2111 Ahg887975 Putative membrane lipoprotein
64.3739 Ahg312123
78.5875 Ahg891846
81.1665 Ahg478122 Pectin lyase-like superfamily protein
85.3815 Ahg936960 MADS-box transcription factor family protein
89.4874 Ahg928322
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression