Detail


ID : Ahg343089

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|343089|fgenesh1_pg.C_scaffold_3002852
Sequence
ATGAAACTTT ATTGCAGTGC TAATGAAGTC CGCTCAAGAA CTCTTGCCAC TTTACGGCAG CTCCGACAAC CGCCACCGGC GACACGACGT GTTGATGCTC GCATCATTAA AACTGGCTTC AACACAGATA CGTGTCGCTC CAATTTCACC GTGGAGGACC TACTCAGGAG AGGTCAAGTT TCTGCTGCAC GCAAGGTGTA CGACGAAATG CCTCACAAGA ACACTGTCTC CACCAATACC ATGATTTCCG GGTACGTGAA GATGGGTGAT CTTTCTAGCG CCCGACACCT TTTCGACGCA ATGCCCGATA GAACTGTTGT CACTTGGACT ATCTTGATGG GCTGGTACGC CGGCAACAAC CAATTCGATG AAGCTTTCAA GCTTTTCCGT CAAATGTGCA GGTCTTGTAC CCTTCCCGAT TACGTCACCT TTACTACGCT TTTACCAGGC TGCAATGACG CTGTTCCCCA GAACGCGGTC GGTCAAGTTC ATGCTTTTGC CGTCAAGTTA GGCTTTGATA CCAACCTCTT TCTCACTGTC TGCAATGTTC TGCTTAAGTC TTACTGTGAG GTAAGGCGAC TCGATTTAGC CTGTGTGTTG TTCGAGGAGA TTCTAGATAA AGACTCTGTC ACATTCAACA CCCTTATCAC AGGGTATGAG AAGGATGGTT TGTACACGGA GGCGATTCAT CTCTTTCTTA AAATGCGGCA GTCTGGTCAC AAGCCTTCAG ATTTCACTTT TTCTGGGGTT CTCAAGGCTG TTGTTGGGTT ACACGATTTT GCTCTTGGTC AGCAACTCCA TGGTCTGTCA GTTACTACCG GCTTTTCCAG GGATGCTTCT GTTGGGAATC AAATTCTTCA TTTCTACTCC AAACATGACC GTGTTCTTGA AACTAGGAAT CTTTTTAATG AAATGCCTGA GTTGGATTTT GTTTCTTACA ATGTGGTCAT CTCAAGCTAT TCACAGGCTG AGCAGTACGA GGAATCGCTC AACTTGTTTA GAGAAATGCA GTGCATGGGG TTTGATCGCA GAAACTTCCC TTTCGCTACG ATGCTGAGCA TCGCAGCTAA CTTGTCATCC TTGCAGGTGG GTCGACAAGT GCACTGCCAG GCCATCGTGG CAACGGCTGA TTCAATCCTC CATGTTGGGA ATTCTTTAGT AGATATGTAT GCAAAATGCG AAATGTTCGA CGAAGCTGAG TTGATATTCA AGAGTTTATC ACAACGGAGC ACCGTTTCCT GGACTGCCTT GATCTCAGGT TACGTTCAGA AAGGGCTTCA TGGAGCTGGG CTTAAGTTGT TCACCAAGAT GCGAGGAGCA AATTTACGAG CAGACCAATC AACTTTTGCT ACTGTATTGA AAGCTTCCGC TGGTTTTGCT TCTCTGTTGC TCGGGAAACA ACTCCATGCA TTCATAATCA GATCAGGGAA CTTGGAAAAT GTCTTCTCCG GAAGTGGCCT GGTTGATATG TACGCCAAAT GTGGTTCTAT CAAAGATGCA GTTCAAGTAT TCGAAGAGAT GCCCGATAGA AATGCAGTTT CCTGGAATGC TTTGATTTCT GCATACGCTG ATAACGGAGA TGGAGAAGCA GCTATTGGTG CATTTACAAA GATGATTCAA TCTGGTCTCC AGCCAGATTC AGTCAGCATC CTAGGCGTCT TGATTGCATG TAGTCACTGT GGATTTGTTG AACAAGGAAC AGAATTTTTC CAGGCAATGT CTCCAATCTA TGGGATAACT CCAAAAAAAA AACATTATGC ATGCATGCTG GATTTGCTTG GTAGAAACGG AAGATTTGCA GAAGCAGAGA AGTTGATGGA CGAAATGCCC TTTGAGCCAG ATGAAATTAT GTGGTCGTCA GTTTTGAACG CATGTCGGAT TTACAAGAAT CAAAGCCTTG CTGAGAGAGC AGCAGAGCAG CTCTTCAGTA TGGAGAAGCT CAGGGACGCC GCTGCTTATG TAAGCATGTC AAACATCTAT GCAGCGGCTG GGAAATGGGA AAACGTTAGG CATGTGAAGA AAGCAATGCG CGAACGCGGA ATCAAAAAGG TTCCGGCTTA TAGCTGGGTT GAAGTTAACC ACAAGATCCA TGTGTTCTCA TCAAATGATC AAACACACCC AAACGGAGAT GAGATCGTGA AAAAGATCAA TGAATTGACA GCTGAGATTG AGAGAGATGG GTACAAGCCT GACACGAGTT CGGTAGTTCA AGACATAGAT GAGCAGATGA AGATTGAGTC GCTTAAATAC CACAGTGAAC GTTTAGCTGT TGCATTTGCT CTGATCAGTA CACCAGAAGG GTGTCCGATT GTTGTGATGA AGAACTTGAG GGCCTGCAGG GATTGCCATG CTGCAATAAA ACTAATATCG AAGATTGTAA AGAGGGTGAT AACTACACAG CCTGGATTTG CCAGGGGAAT GTCTGATGGA TTTCCCAAGT TTATCAAGTC TGAAGGTCTT GGAGGTTTGT ACAAGGGAAT TGGTCCACTT TGGGGCGTCA GATTCCTTTT GCAAAATGTG ATAAGAAAAA CTACCTTTGT AACAGACACA ATGATGAAGT TTGCTTCTTT TGAGACCATT GTGGAGATGA TCTACAAGTA TGCAATTCCG AGGCCAAAGG ACCAATGCAG CAAGGGTCTA CAACTAGGGG CGGTGAAGAA GATAGGGCTG TTGGGTCTAT TCACAAGAGG GCTGCCTCTA CGAATTGTGA TGATAGGAAC ATTGACCGGA GCGCAGTGGG GTATCTACGA TGCTTTCAAA GTCTTTGTTG GCCTTCCAAC CACTGGTGGT GTTGCTCCCG CGGCTGCCAT CACTCCTGCT GAAGCAAAGG CTTAA
Length2835
Protein Sequence
Protein Residue
Map Locationscaffold_3: 18385321.. 18388962
Download Sequence
A.thaliana
AGI-codeAT3G02010.1
DescriptionPentatricopeptide repeat (PPR) superfamily protein
TAIR curator summary
Alias
Gene coexpression
MR
MR Locus Description
38.3275 Ahg470582 Tetratricopeptide repeat (TPR)-like superfamily protein
40.4228 Ahg940081 Pentatricopeptide repeat (PPR) superfamily protein
42.5441 Ahg334303
43.1277 Ahg927712 Pentatricopeptide repeat (PPR) superfamily protein
57.3672 Ahg948159 Pentatricopeptide repeat (PPR) superfamily protein
58.8048 Ahg325399 MEI2 C-terminal RRM only like 2
91.0275 Ahg341194 Homeodomain-like superfamily protein
91.1592 Ahg315081 DEA(D/H)-box RNA helicase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression