| Annotation |
|---|
| Description | jgi|Araly1|343169|fgenesh1_pg.C_scaffold_3002932 |
| Sequence |
ATGATTGTTA CCGGAGCTTG CGACTTCTCT TCATCACTCT CCGTCGCCAC TTCCTCCTCC TCCGCCGTCT CCGTCACAAC CTTCAACATT TCCTCTCTCT CCTCTCTCTC CTCTAACCCT AACATCATCA TCAATTCCAG CTCAACTCTC TTCCGTTCCC TTTCCTTCTC CCTTATCCGC CATCGCAGCA GCTACTCTCG TCGCTCTCTC CGCCGTCTCT CTATCCACAC AGTTCATGGA AACAAAACCC AATTCTTCTC TCACTCTTCT ACGCGAACTC CACCACTTTT CACGGCTAAT TACGCTGCTC AACGATGCGG GACTTTCGTC GAACACCTTA CAGGCATTAC AGAATCGAAA GAAGGAAGCA GCGAAGCCAA CGATTTCGGT GATGTAGAGT CTGCTAGGAA CGATATAAGG AATGTTACGA CTCGTAGAGT AGAGACGGAG TTTGAAGTTA GAGAATTGGA AGAGTTGCCG GAGGAATGGC GACGGTCGAA GCTAGCGTGG CTGTGTAAAG AAGTTCCGAC GCATAAGGCC GTGACGCTTG TGAGGCTATT GAATGCTCAG AAGAAATGGG TTCGTCAAGA AGATGCTACT TACATCGCTG TTCATTGTAT GCGGATTCGT GAGAACGAAA CTGGATTCAG GGTGTATAGA TGGATGACAC AGCAGAATTG GTACCGGTTT GATTTCGGGT TAGCGACGAA GCTAGCTGAT TACTTGGGCA AAGAACGGAA ATTTACGAAA TGCCGGGAGG TATTTGATGA TATTTTGAAT CAAGGGCGTG TTCCAAGTGA ATCTACATTT CATATTCTTG TAGTTGCATA TCTAAGTAGC TTATCAGTCG AAGGCTGTCT CGAGGAAGCG TGTAGCGTTT ACAATAGAAT GATTCAACTT GGAGGTTACA AGCCGCGTCT TAGTCTGCAT AATTCTTTAT TTAGAGCTTT GGTAAGCAAA CGAGGAGGGA TTTTGAATGA TCAGCTTAAG CAAGCCGAGT TTATCTTTCA CAATGTTGTG ACAACCGGGC TTGAGGTTCA GAAGGATATT TATAGCGGAT TAATCTGGCT GCATAGTTGC CAAGAAGAAG TTGACAAAGA CAGGATTAAC TCTCTAAGAG AAGAGATGAA GAAGGCGGGC TTTCAGGAGA GTAAAGAAGT TGTGGTGTCG TTACTGAGAG CATATGCAAA GGAGGGAGGT GTGGAAGAAG TTGAGAGGAC GTGGCTTGAA TTGCTTGATT TAGATTGTGG TATACCTTCT CAGGCGTTTG TGTACAAAAT GGAAGCTTAT TCGAAAGTCG GTGATTTTGC GAAAGCTTTG GAGATATTCA GGGAGATGGA GAAGCATTTA GGTGGTGCAA CTGTGTCTGG ATACCACAAA ATCATTGAGG TTCTATGTAA AGTCCAGCAA GTGGAATTTG CGGAATCTCT CTTGAAGGAG TTTGAAGAAA GTGGGAAGAA GCCGCTTCTA CCATCATACA TCGAAATAGC CAAAATGTAC TTCGATTTGG GTTTACATGA GAAATTGGAG ATGGCTTTTG TTGAGTGCTT GGAGAAATGC CAACCTAGCC AGACTATATA TAACATATAT CTGGATTCAT TGGTTAAAAT CAGCAACCTT GAGAAAGCAG GGGATGTCTT CAATAAAATG AAAAACAACG GGACAATCAA TGTGAATGCT AGATCGTGCA ACAACCTTTT AAAAGGATAC CTAGATTCTG GAAAACAAGT TCAGGCAGAG AGAATATATG ATCTGATGAG ATTGAAGAAA TACGAAATCG AACCACCGCT TATGGAAAAG CTTGATTACA TCCTGAGCTT GAAGAAAAAA GAGCTGAAGA AACCGTTAAG CATGAAGCTA AGCAAAGACC AGCGTGAGGT ATTGGTAGGT TTGCTGTTAG GTGGCTTGCA AATCGAATCT GACAAAGAGA AGAAGAGCCA CATGATCAAA TTTGAATTCA GAGAGAATTC TCAGACCCAT CTGATTCTTA AACAACACAT ACATGACCAG TTCCGCGAGT GGTTTCATCC TTTAAGCGAT TTTCAGGAGG ATATAATACC GTTCGAATTC TACTCCGTTC CCCATTCATA CTTCGGGTTT TACGCTGAAC ATTTCTGGCC CAAGGGTCAA CCAGAGATTC CAAACCTGAT CCATCGGTGG CTCTCACCAC ACTCACTCGC ATATTGGTAC ATGTACAGCG GCTTTAAAAC ATCATCAGGA GACATTATCT TGAGATTGAA GGGAAGTCTA GAAGGTGTTG AGAAGGTAGT AAAGGCTCTT AGAGCCAAAT CAATGGAATG TCGAGTTAAG AAGAAAGGAA AAGTCTTCTG GATCGGACTT CAGGGAACAA ACTCAGCTTT GTTCTGGAAC CTAATAGAGC CTTACGTGTT AGAGGACTTG AAAGATCATT TGAAACCTCC TTCTGAATCA ATGGGCAATG AATCGGCACA AAATCAAAAA CTAGATTCAA CCAAACCAGT TGAAGAAATT CATCATTATT CATTAAGTTC TTCTCTACAA TTGTAA |
| Length | 2526 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 19229187.. 19231481 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G15820.1 |
| Description | endonucleases |
| TAIR curator summary | Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage. |
| Alias | [OTP51][ORGANELLE TRANSCRIPT PROCESSING 51] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.16441 |
Ahg472886 | Rubisco methyltransferase family protein |
| 8.83176 |
Ahg487170 | ABC2 homolog 12 |
| 11.0905 |
Ahg318289 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 11.0905 |
Ahg473719 | |
| 11.6619 |
Ahg903252 | FtsH extracellular protease family |
| 14 |
Ahg484344 | |
| 16.1864 |
Ahg470715 | translocon at the inner envelope membrane of chloroplasts 110 |
| 16.2481 |
Ahg495104 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| 19.0788 |
Ahg482933 | pseudouridine synthase family protein |
| 19.1833 |
Ahg930655 | Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|