Detail



ID : Ahg344061

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|344061|fgenesh1_pg.C_scaffold_4000403
Sequence
ATGGTCTCAC CACCTCCAAC CCTAATGGTA TTTGATGACT TCAACAACAA CTCTTATGAT GGGGGTGCTG GTCCTAGTAC TGGTCCAAGA AAACGAGGAC GTGGCCGACC AAAGGGTTCA AAAACCGGAA CGAGAAAGCC AAAGAAGCCA AAAGCATATG ATCCTAATAG CAAACTGATT AAATCTTGTC CAAAATTTGA TTCAGGGATA ACCAAAGCAG AGAGAGAAAG CGGAAACCTT GAGATTGTTG CTTCGGTGTT GATGCGGTTT GACGCGATTA GACGGCGATT ACACCAAGTA AACCAGCCAA AAGACATCCT TACAACAGCG TCAACTAATT GCATGAGATT GGGAGTCCGG ACAAATATGA CGAGAAGAAT TGGTCCAATT CCTGGAGTAC AAGTAGGCGA TATATTCTAC TACTGGGGTG AAATGTGCTT AGTCGGTCTT CACAGAGACA TGGCCGCGGG CATTGATTAT CTGTCAGCTA AAAGGAGTGG AGTGGATGGT CATGCTGCTA CGAGTGTGGT AACATCAGGA CAGTACGATG ATGAAACCGA GGAGCTTGAC ACTTTGATCT ATATCGGACA AGACGGAAAG GACAAGAACC GTCAACCATG TGATCAGCAT GTGATAGGAA AATCTGGCTT TAAGGAGTTC AGATTCAAAT TGGTGAGGAA ACCAGACCAA CCATCTGGTT ATGCAATCTG GAAATCAGTT GAAATTTTGA GGAACCATGA CTTGATTGAT CCAAGAAATG GTTCTATACT TGGAGATCTT TCTTTTGGAG CAGAGGTTTT ACGAGTTCCG CTCGTTAATG AAGTTGATGA AGATGACAAA ACGATTCCTG AAGATTTTGA CTACATTAGA TCTCAGTGTT ACTCAGGTAT GATGTTTGAT CTTAATGTTG ATATTCAATC ACTTGGATGC CAGAATTGTG AGTCATGCAG TCATCAAAAC TGCTCGTGCA TGGGTAAAAA CGGTGGCGAG CTACCATACC ATAACAACAT TTTGGTTTCT CGTAAACCAT TGATTTACGA GTGTGGTGGA TCTTGTCCCT GCCCCATCGA TTGCCCAAAC CGATTGGTTC AAACCGGTTT GAAGCTCCAC TTGGAAGTGT TCAAAACAGC AAACTGTGGT TGGGGTTTAC GTTCTTGGGA TCCAATCCGA GCGGGAACTT TTATCTGCGA GTTTGCCGGT GTGAGCAAGA CAAAAGAAGA AGTAGAAGAG GATGACGATT ACTTGTTCGA CACATCTCGG ATTTATCATA CCTTCATATG GAACTATGAA CCTCAGCTTT TGCGTGAAGA TGCTTCAAAA CAGGTCTCTG AAGTTATCAA TCTTCCGACA CAAGTCTTGA TAAGTGCCAA GGAGAAAGGA AATGTAGGTC GGTTCATGAA CCACAGCTGT TGGCCCAATG TTTTTTGGCA GCCTATTGAA TATGAAAACA ACGGTGTTAC ATATGTTCGC ATTGGACTTT TTGCAATGAA GCATATTCCT CCAATGACAG AGTTAACATA TGACTATGGA GTTTCTTGTG TGGAGAAGAA TGGAGAAGAT GAGATACTTT ATAAAGGCAA GAAGATTTGT CTATGTGGTT CAGTCAAATG TCGTGGCTCT TTTGGCTGA 
Length1629
Protein Sequence
Protein Residue
Map Locationscaffold_4: 3007605.. 3009369
Download Sequence
A.thaliana
AGI-codeAT1G17770.1
DescriptionSU(VAR)3-9 homolog 7
TAIR curator summaryEncodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.
Alias[SDG17][SUVH7][SET DOMAIN PROTEIN 17][SU(VAR)3-9 homolog 7]
Gene coexpression
MR
MR Locus Description
2.82843 Ahg942211
4.12311 Ahg322709
10.3923 Ahg481106 Protein of unknown function, DUF617
16.4317 Ahg338560
21.0238 Ahg890245
23.5584 Ahg948906 senescence associated gene 18
24.0832 Ahg337696 COP1-interacting protein-related
27.9285 Ahg331706 oligopeptide transporter 9
30.0666 Ahg494865 Pectin lyase-like superfamily protein
30.8221 Ahg341128 Pollen Ole e 1 allergen and extensin family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression