Detail


ID : Ahg345481

Blast(Query):  A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|345481|fgenesh1_pg.C_scaffold_4001823
Sequence
ATGAGCTCTG TTTGTGGTAA GTTGGATTAC AAAGATGCAG ACTTTGACAT CTCCACTTCG AGTGCCACGC AATGTTCTAA AGGCTCGAAG AATACCTCGT TTACTGGCTC TGAAGATTCT CAGGAGTCTG ATGGAGATGA AACTGGTTAT ATAGACCCAA CTGCGAATGA AGGTACCGCT GATCAGGATT TCGGCAAATC CACTTTAAGT CCTAACTCTT CAGATGATGA AGACAAGGAT GAGAATCTTA AGACTACACC AGTTGTTCTC ATCCCAGCCA TAAAAGGCAG CCGAGAGAAG CATGGCTTGT CACTGAGGAA GTTGAGTGTT TCATGGGCGG CTGATGTGTA TGATCCTCCT CCCTCGATAG CCTCCCACAC AAGAAGCAAG AAACAACTAC AGAAATCAAA GAGCAAAGAC AATCACAGGA AGACCGGAAA GAAAGGACAG AAGAGCAAAG ACAACTCTTC CTCACGTGGT GGCAGCAGCA AAGACAAGAA GCAAGCTTCT CGCAAACACA GCCGCGAAAA ATTTGAATGG GTAACTCAGA TGCCGTTAGT TGCAGCATCT TCTTGA
Length576
Protein Sequence
Protein Residue
Map Locationscaffold_4: 17019450.. 17020540
Download Sequence
A.thaliana
AGI-codeAT2G37478.1
Descriptionconserved peptide upstream open reading frame 52
TAIR curator summaryUpstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF52 represents a conserved upstream opening reading frame relative to major ORF AT2G37480.1
Alias[CPuORF52][conserved peptide upstream open reading frame 52]
Gene coexpression
MR
MR Locus Description
24.6779 Ahg480957
31.9374 Ahg493750 ALWAYS EARLY 4
35.9166 Ahg891573 Disease resistance protein (TIR-NBS-LRR class) family
38.6523 Ahg471476 autoinhibited Ca2+/ATPase II
61.2536 Ahg472494 Major facilitator superfamily protein
62.2896 Ahg315955 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
66.8805 Ahg472349 O-methyltransferase family protein
86.0116 Ahg929632 cyclic nucleotide-binding transporter 1
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression