Detail



ID : Ahg356894

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|356894|fgenesh1_pg.C_scaffold_8000681
Sequence
ATGTCAGAGG ATGATCTTCC TTACCAAGTG AAAATCAACG GTCAAGGAGA TCTTGAGACA ATCGGACGGT TTGGATTTGA TGATCAGATT GACTGTTTAG TGATAGCTCA TTCTAAGGTG GACGCTACCA CAGGAGATCT CCACACTCTG AGCTACAATG TTTTGAGGAA ACCTCATCTC ATGTATCTTA AATTCGACAC GTGCGGGAAA AAGACACGTG ACGTGGACAT CACGCTCCCG GAACCAACGA TGATTCATGA TTTTGCGATA ACCGAAAATT TTGTCGTCAT ACCGGATCAG CAAATGGTAT TCAAATTAAC CGAAATGATC CGGGGCGGGT CACCGGTTAT CTATGATAAA GAGAAAATGT CGAGATTCGG GGTTTTGTCA AAGCAAATCA GACCGGTTCG GAGAACCGAA GATGGAGATC CGGTTATCGT CGTAATCGGG TCGTGTATGA GCCCACCCGA TACAATATTC AGTGAATCTG GAGAACCGAC CCGGATTGAA TTAAGCGAGA TCCGGTTAAA TATGCGTACG AAAGAATCGA ACCGGAAGGT TATTGTAACC GGGATTAATT TAGAAGCGGG TCACATAAAC AAGAGTTTTG TGGGCCGGAA AAACCGTGGC ATTGCAAAGG TGGATATAGA AAACGGCACC GTTTCAAAGT TTGATACCGG ACCCGGACGG TTGGACACCG TTTCAAAGTT TGATACCGGA CCCGGACGGT TGGATGGCGA ACCGTATTTC GTACCGGAAG GAGAAGGAGA AGAAGACAAT GGGTATGTAA TGGGGTTTGT GAGAGATGAA GAGAAAGATT AG 
Length822
Protein Sequence
Protein Residue
Map Locationscaffold_8: 6000287.. 6001210
Download Sequence
A.thaliana
AGI-codeAT3G24220.1
Descriptionnine-cis-epoxycarotenoid dioxygenase 6
TAIR curator summaryA member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition.
Alias[ATNCED6][NCED6][NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6][nine-cis-epoxycarotenoid dioxygenase 6]
Gene coexpression
MR
MR Locus Description
22.383 Ahg351806 Galactose oxidase/kelch repeat superfamily protein
24.3105 Ahg913196 jacalin lectin family protein
28.3019 Ahg890702
28.775 Ahg897183 Polynucleotidyl transferase, ribonuclease H-like superfamily protein
50.4381 Ahg479371 AGAMOUS-like 103
51.1077 Ahg900119
52.8772 Ahg926312
54.9272 Ahg490208 transposable element gene
58.6515 Ahg920239 basic leucine-zipper 58
58.8218 Ahg947612
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression