| Annotation |
|---|
| Description | jgi|Araly1|470218|fgenesh2_kg.1__172__AT1G02580.1 |
| Sequence |
AGGCGAGTGG TTAATGGAGA AGGACAACCA TGAGGACGAT GGTGAGGATT TGCCACCCGA TATAAATCAG ATAAAAGAGC AAATCGAAGA GGAGAGATTT CTGCATATCA AGAAAACATT CGAGCTGAGA TGCATTCCAA GTGTAGCTGC TCATGCTTCA CACCATCAAT CGTTTGACTT AAACCAGCCC CTTGCAGAGG ATGATAATGA AGGAGACAAC AAAACACTTC TTTCTAGAAT GCAAAACCCA CTTCATCATT TCAGTGCCTT ATCTGATTCT GATACTTACG AAGATCAAGG TTGTGTTTTT AATAAAGAGG CACCATTATT TCCAAGTGTC AACCTTCCAG TTGTTGAGCA GCTACCACGA TCCCTTACAT GGGTCTTCAT CAAAAGGCAT CTGATGGCTG AAAGTGATTC TGTGATTGGT AAGAGACAAA TCTATTATTT GAATGGTGAG GCACTAGAAT TGAGCAGCGA AGAAGAAGAA GAAGATGAAG AAGAAGATGA GGAAGAAGCC AAGAAAGAAA AATGCGAATT TTCCAAAGAT GTAGACCGGT TTATATGGAC GGTTGGGCAG GATTATGGTT TGGATGATCT GGTCGTGCAG CGAGCTCTCG CCAAGTTCCT CGAAGTGGAA GTTTCCGATA TATTGGAAAG ATACAATGAG CTCAAGCTTA AGAATGATGA AACTGTTGGT GAGGCTTCTG ATTTGACATC CAAGACAATA ACTACTGCTT TTCAGGATTT TGCTGATAGA CGTCATTGCC GCCGTTGCTT GATATTTGAT TGTCATATGC ATGAGAAGTT TGAGCCCGAG TTTAGACCCA GCGAAGACAA ATCTGGTTTG TTTGAGAATG AAGATAGAGA ACCATGCAGT GAGCATTGTT ACCTCAAGGT GAGGAGTGTG ACAGAAGCTG ATCATGCGGT AGATAATGAT AACTCTATAT CAAACAAGAA TGTGGTCTCA GATCCAAACA CAACTATGTG GACGCCTGTG GAGAAGGATC TTTACTTGAA AGGAGTTCAA ATCTTTGGGA GAAACAGTTG TGCTATTACA TTAAACATAC ATCGGGGGCT TAAGACGTGT CTAGAGGTTT ACAATTACAT GCTTGAACAA GATCAATGTA CTATGTCATT AGTCCTTCAC AAAACTACAA AAACAAAGAA TCAGGTTAAC AAAAAAGTAT CTCGAAAAGG TACTAGGTCG GTCCGCAAAA AATCCAGACT CCGAAAATAT GCTCGTTATC CGCCTGCTTT GAAGAAAACA ACTAATGGAG AAGCTAAGTT TTATAAGCAC TACTCACCAT GCACTTGCAA GTCAAAATGT GGATATCAAT GCCCTTGTTT AACTAATGAA AATTGCTGTG AGAAATATTG CGGGTGCCCG AAGGATTGCA ACAATCGCTT TGGAGGATGT AATTGTGCAA TTGGCCAATG CACAAACAGA CAATGTCCTT GCTTTGCTGC TAATCGTGAA TGTGATCCAG ATCTATGTCG GAGTTGTCCT CTTAGCTGTG GAGATGGCTC TCTTGGTGAG CCATCAGAGC AAATACAATG CAAGAACATG CATTTCCTCC TTAAAAAAAA TAAGAAGATT CTCATTGGAA AGTCTAATGT TCATGGATGG GGTGCATTTA CACCGGACTC TCTTAAAAAG AATGAGTTTC TAGGAGAATA TACTGGAGAA CTGATCACTC ATGAGGAAGC AAATGAGCGT GGGAGAGTAG AAGATCGGAT TGGTTCTTCA TACCTCTTTA CCTTGAATGA TCAGCTCGAA ATCGATGCTC GCCGTTATGG AAACAAGTTC AAATTTCTCA ATCACTCAGC AAGACCTAAC TGCTACGCCA AGTTGATGAT TGTGAGAGGA GATCAGAGGA TTGGTCTATT TGCAGAGAGA GCAATCGAAC AAAATGAGGA GCTTTTCTTC GACTACTGCT ATGGACCAGA GCATGCGGAT TGGTCTCGTG GTCGAGAACC TAGAAAGACT GGTGCTTCTA AAAGGTCTAA GGAAGCCCGT CCATCTAGAT AGATTTGGAT CTGAGGAGAA GCAGCAATAC AAGCAGTCGT TTTTTAAAGT TATGGTAATA TCAATAAATA ATGTAATGCT ATTTTGTGTT ACTAAACCAA AACTTAAGTT TCTGTTTAAT TTGTTTCAGG GTTTTTTGTT TTGTTTGTCA TATGTGTCTT AAGCTCTCAA AGTTTTATTT TTGTATTTCA ATTAAAAAA |
| Length | 2229 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 635484.. 639859 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G02580.1 |
| Description | SET domain-containing protein |
| TAIR curator summary | Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization |
| Alias | [EMB173][FIS1][MEA][SDG5][EMBRYO DEFECTIVE 173][FERTILIZATION INDEPENDENT SEED 1][MEDEA][SET DOMAIN-CONTAINING PROTEIN 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 34.0294 |
Ahg489727 | KNOTTED-like from Arabidopsis thaliana |
| 52.9717 |
Ahg347008 | F-box family protein |
| 60.4152 |
Ahg321478 | Fatty acid hydroxylase superfamily |
| 88.2666 |
Ahg351609 | Protein of Unknown Function (DUF239) |
| 92.5635 |
Ahg936648 | |
| 95.1735 |
Ahg478262 | Pectinacetylesterase family protein |
| 95.6243 |
Ahg316947 | Pectin lyase-like superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
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