Detail


ID : Ahg470379

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|470379|fgenesh2_kg.1__333__AT1G04020.1
Sequence
GAAGTGCATC TTCTCCTTGT CTTCAGCTTC AAGAGCTTTC GTCGTTTAGA TCTGGTTTTT GGATACTAAT GGCGGAATTT ACAAACATGC TGATGAATCC ATGGGTTCTT CATCTCCAGA AGCTCGAGCT CGAGCTCAAT TGCCCTCTAT GCTTGAAATT GCTTAATCGA CCGGTGTTGC TTCCATGCGA CCACGTCTTT TGCGATTCAT GTGTACACAA ATCGTCGCAA GTCGAAACAG GCTGTCCTGT CTGCAAATCT AAACATTCCA AAAAGTCTCG GAGGAATCTT CAATTTATGG AGAGTGTTAT AAGCATATAC AAAAGCTTGA ATGCAGCTGT TAGTGTTCAT CTCCCACAAT TACAGATTCC GAATGATTGC AACTACAAGG ACGATGCCCC TAAACACGGC GGATCTGAAG ATTCTGAGAT GACTGATAAG GATGTGAGCA AGCGCAGTGG TGGTACTGAT TCCTCCTGTC GTGATGGTTC TCCTCTTCCG ACTTCAGAAG AAAGCGATCC AAGACCTAAG CATCAGGATT GGACTGCTGA GCAGTTGCGT GATCATCTCT TATTATATGA GTTTGAATCA GAGAATGATG CTGGCAATCA CACTCCGGAA AGTTATACAG GACAAGCTGC AAACAATGTG AGGGACATCA GTGCTTCTGA GCAGCCTGCC AATGCTGCAA GGAAGCGGAT TTGTGGTGAT TCCTTTATCC AGGAAAGCAA TCCAAATCCT AAGACTCAGG ATCAAACTTT GCTGCGGTTG ATGGAGAGCC TCCGGTCAGA TGATCCCACT GATTATGTTA AATCACAGAA ACATCAGCCG TTACCCAAGA GTCATACAGA ACAAGATACT AAAAGGAAGC GTGACATCAC CGCTTCCGAA GCAATGGAAA ATCATCTGAA AGTTCCCAAG AGGGAGAAGA ACCTGATGCA AAAAGCTGCT GATATTGACT TCAATGATAA ATGCTCTGCA AACTCTGATG ATCAACTAAT TGAGAAAATC TCAAAGGCAT CAGATAAACC ACCATCCAAC ATAACTATTT GTGGATTCTG CCAATCCGCT ATGGTATCTG AGGCTACTGG AGAAATGCTG CATTACTCTA GGGGAAGACC AGTGGTTGGA GATGACATCT TCCACTCCAA TGTTATCCAT GTCCATAGCG CATGTATCGA ATGGGCACCG CAAGTTTACT ATGAAGGTGA CACAGTGAAG AACCTGAAAG CAGAACTGGC AAGGGGGATG AAAATCAAGT GCACTAAATG TAGTCTGAAA GGAGCTGCCT TGGGCTGCTA TGTCAAGTCT TGCCGCCGAA GCTATCATGT TCCATGTGCA AGGGAGATTT CCAGATGCCG TTGGGATTAT GAAGACTTTC TTCTACTTTG TCCAGCTCAT TCTTCTGTCA AATTCCCAAA CGAGAAGTCT GGACATCACG TATCCAGAGC TGAGCCCTTA CCAAAAACAA ATCCTGCTGA GCTATGTTCT TTGGAAAAAA CACCAGCTAT TACAAAAGAG CTCGTTCTCT GTGGATCAGC ACTCTCTAAA AGTGATAAGA ACCTGATGGA AAGTTTAGCT GTTAAATTCA ATGCAACCAT ATCAAGGTAC TGGAACCCAA GTGTTACACA TGTGATTGCT TCTACAGACG AAAAAGGAGC ATGCACAAGA ACTTTGAAGG TTCTTATGGG TATTCTCAAT GGAAAATGGA TTATCAATGC AGATTGGATG AAAGCAAGCC TTGAAGCTTC TCAACCTGTT GATGAAGAAC CATTTGAGAT TCATATTGAT ACTCAAGGAT GTCAAGATGG ACCAAAAACC GCAAGACTCA GAGCAGAAAC TAATAAACCA AAGCTCTTTG ATGGCTTGAA GTTTTATTTC TTTGGAGAAT TCGATAAAGG ATACAAAGAA GACCTTCAGA ATCTAGTAAA AGTAGCTGGT GGGACGGCCT TGAACACAGA GGATGAGCTT GGTGCAGAAA GCAGCAACAC TGTCAATGAC CAAAGATCAT CATCGATTGT GGTTTACAAC ATTGATCCTC CACTTGGATG TGCCTTAGGT GAAGAAGTCA CGATTATTTG GCAACGAGCT AATGACGCAG AAGCTTTAGC AAGCCAAACT GGGTCTCGTC TCGTTGGTCA CACATGGCTC TTGGCGTCCA TTGCTGGTTA CAAGTTACAT CCTGTGATTA GCTAATTTTG AGAAAGAGAC AAAAACATAT GTAACATTGT TTAATTTCAC TTTTAATTTC GTAAGATAAC AAAACAGATT CTTGTTTGTA CGCATATAAA TTTCAACTTT TACTTTGGAA AAACAAAGCT TTGTAACTTA AATTTTGGAA ATCTTACCG
Length2349
Protein Sequence
Protein Residue
Map Locationscaffold_1: 1188351.. 1191966
Download Sequence
A.thaliana
AGI-codeAT1G04020.1
Descriptionbreast cancer associated RING 1
TAIR curator summaryEncodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein–protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.
Alias[ATBARD1][BARD1][ROW1][breast cancer associated RING 1]
Gene coexpression
MR
MR Locus Description
7.14143 Ahg494345 Minichromosome maintenance (MCM2/3/5) family protein
16.4317 Ahg927772 zinc knuckle (CCHC-type) family protein
18.5742 Ahg496254 Replication factor-A protein 1-related
28.4605 Ahg927888 cysteine synthase 26
30.9193 Ahg496177 GTP binding Elongation factor Tu family protein
30.9839 Ahg476654
36.6333 Ahg490375 Minichromosome maintenance (MCM2/3/5) family protein
37.0405 Ahg483041 Ribosomal protein L10 family protein
45.3652 Ahg934367 Ribosomal protein L11 family protein
46.6047 Ahg485212 Cytidine/deoxycytidylate deaminase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression