Detail


ID : Ahg478011

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|478011|fgenesh2_kg.3__712__AT3G06920.1
Sequence
ATGGTGGGAT TCGCAAGAAC AAAATTTTGT AAGCACTTAT CATCTTTGTC TGATAATGGC GAAAATCATG AGAAACCATA TACATTTGAG GGTAATAGGC AAATTGTTAA TGATATTTGC AATGTTTTGG AGACTGGTGC TTGGGGTCCT TCAGCTGAGA ATGCTCTATC TGCTCTAAAC TTTAAACCAC AACCAGAATT TGTCATTGGG GTTTTACGGA GGCTGAAAGA TGTTAATCGG GCGATTGAGT ATTTCCGTTG GTATGAGAGA AGAACCGAGC TGCCTCATTG TCCCGAATCA TACAACTCCT TGCTTTTAGT GATGGCTCGT TGTAGGAATT TTGATGCTTT GGACCAGATT CTTGGAGAAA TGAGTGTTGC AGGATTTGGC CCTTCTGTTA ACACTTGTAT TGAGATGGTT TTGAGCTGCG TTAAGGCTAA TAAGCTTAGG GAAGGTTTTG ATGTTGTGCA GAATATGAGG AAGTTCAAGT TCCGACCTGC TTTTTCAGCT TACACAACTC TTATCGGTGC TTTCTCAGCA GTTAATCATT CTGATATGAT GTTGACACTC TTTCAGCAAA TGCAGGAGTT AGGATATGAG CCAACCGTTC ATCTTTTTAC AACATTGATT CGGGGCTTTG CCAAAGAGGG TCGAGTTGAT TCTGCTCTAT CTTTGCTTGA TGAGATGAAG AGCAGCTCTC TTGATGCCGA CATTGTTCTT TACAATGTAT GTATAGATAG CTTTGGTAAA GTGGGCAAGG TTGATATGGC ATGGAAATTT TTTCATGAGA TTGAAGCGAA TGGTTTAAAG CCTGATGAAG TCACTTATAC CAGCATGATA GGAGTTCTGT GCAAGGCAAA TAGATTGGAT GAAGCTGTAG AGATGTTTGA GCATTTAGAG AAGAATAGAC GGGTCCCTTG CACTTATGCT TACAACACGA TGATTATGGG TTATGGTTCG GCTGGAAAAT TTGATGAAGC ATACAGTCTC CTAGAGAGAC AAAGGGCAAA AGGGTCTATA CCGAGTGTGA TTGCATATAA TTGCATTCTT ACATGCTTAA GGAAAATGGG AAAAGTGGAT GAAGCTTTGA AAGTATTCGA GGAGATGAAA AAAGACGCTG CTCCAAATCT TTCAACCTAT AATATTCTCA TTGACATGCT GTGTAGAGCT GGTAAACTTG ACTGTGCTTT TGAGCTACGC GATTCTATGC AGAAGGCTGG TCTGTTTCCT AATGTTAGGA CTGTGAACAT AATGGTTGAT CGTCTCTGTA AATCCCAAAA ACTTGATGAA GCATGTGCTA TATTTGAGCA GATGGATTAT AAGGTTTGTA CCCCAGATGA GATTACATTT TGCTCCCTCA TAGATGGCTT AGGAAAGGTC GGAAGAGTTG ATGACGCTTA CAAAATCTAT GAGAAGATGT TAGATTCTGA TTGTCGTACT AACTCTATTG TTTACACATC CCTCATAAAA AACTTCTTCA ACCACGGTAG AAAAGAAGAT GGACACAAGA TATACAAGGA CATGGTTAAT CAAAACTGTT CTCCTGATTT ACAGCTTCTT AATACGTACA TGGATTGCAT GTTCAAGGCT GGAGAACCAG AAAAGGGAAG GGCGATGTTT GAAGAAATAA AATCCCGTCG GTTTGTCCCA GATGCTCGAA GCTACTCGAT TTTAATTCAT GGACTAATAA AAGCAGGATT TGCAAATGAA ACTTATGAGT TGTTTTATTC CATGAAAGAG CAAGGCTGTG TCTTGGACAC CCGTGCTTAC AATATTGTCA TTGACGGTTT CTGCAAGTGC GGAAAAGTGA ACAAAGCTTA TCAGCTGCTG GAGGAAATGA AGACAAAAGG TTTTGAGCCA ACTGTCGTTA CGTATGGTTC AGTCATTGAC GGGCTAGCAA AAATAGATCG GCTTGATGAA GCTTATATGC TCTTTGAGGA AGCAAAATCA AAGAGAATAG AGCTAAATGT GGTAATTTAC AGTAGTCTAA TTGATGGGTT TGGAAAAGTT GGTAGGATAG ATGAAGCTTA CCTTATCTTG GAAGAGCTTA TGCAGAAAGG ATTAACACCT AATGTTTATA CATGGAACTC ATTGCTTGAT GCATTGGTCA AAGCTGAGGA AATCAACGAA GCGCTTGTCT GTTTTCAGTC GATGAAAGAA TTGAAATGCA CGCCAAACCA AGTTACTTAT GGTATCCTAA TAAATGGTCT TTGTAAGGTC AGGAAGTTCA ATAAAGCCTT TGTCTTTTGG CAAGAGATGC AGAAACAGGG GATGAAACCT AGCACTATTT CTTACACCAC CATGATATCG GGGCTTGCAA AGGCTGGGAA TATTGCAGAG GCTGGGGCGC TATTTGATCG GTTTAAGGCA AACGGTGGTG TTCCAGACTC TGCTTGTTAT AATGCCATGA TCGAAGGTCT AAGTAACGGA AACAGGGCAA TGGATGCTTT TTCTCTTTTT GAGGAAACAC GTCGAAGAGG ATTACATATC CATAACAAAA CCTGTGTTGT TCTTTTGGAT ACTTTGCATA AGAATGATTG TCTTGAGCAA GCAGCTATTG TTGGAGCTGT TTTGAGGGAA ACGGGAAAGG CACGGCATGC TGCACGATCT TGGTAG
Length2616
Protein Sequence
Protein Residue
Map Locationscaffold_3: 2716777.. 2724334
Download Sequence
A.thaliana
AGI-codeAT3G06920.1
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
TAIR curator summary
Alias
Gene coexpression
MR
MR Locus Description
14.3178 Ahg898458 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
15.2971 Ahg471752 Tetratricopeptide repeat (TPR)-like superfamily protein
16.9706 Ahg484639 Tetratricopeptide repeat (TPR)-like superfamily protein
27.4955 Ahg484450
38.833 Ahg473514 SUPPRESSOR OF AUXIN RESISTANCE1
41.9524 Ahg919808 Tetratricopeptide repeat (TPR)-like superfamily protein
48.5386 Ahg474889 Pentatricopeptide repeat (PPR) superfamily protein
50.5173 Ahg479783
51.5558 Ahg476277 Pentatricopeptide repeat (PPR-like) superfamily protein
53.1037 Ahg313471
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression