| Annotation |
|---|
| Description | jgi|Araly1|479958|fgenesh2_kg.3__2659__AT3G24495.1 |
| Sequence |
ATGCAGCGCC AGAGATCGAT TCTGTCTTTC TTCCAAAAGC CCTCGCCGGC GACTACTCAG GGTTTGGTTT CCGGCGATGC TACCAGTGGA GGCGGCGGCG GCGTCGGAGG AGGATTGCGA CTCAATGTGA AAGACGACGC TTCTGTACGC TTTGCTGTTT CGAAATCTGT CGATGAGGTT AGAGGAACGG ATACTCCACC GGAGAAGGTT CCGCGTCGTG TTCTGCCGTC TGGATTTAAG ACGGCTGAAT CCGCCGGAGG TGGTGCTTCG TCATTGTTCT CTAATATTGT GCATAAGTTT GTGAAGGTCG ATGATCGAGA ATGTTCTGGA CAGAGGAGCC GAGAAGATGT TGTTCCGCTG AATGATTCAT CTGTATGTAT GAAAGCTGAT GATGTTATTC CTGAATTTCG TTCCAATAAT GGTCAAACTC AAGAAAGAGA CCATGCTTTT AGCTTCAGTG GGAGAGTAGA AGATAATATA GGAGTAGATG ATGATGTTCC TGGTCCAGAA ACACCAGGGA TACGTCCAAG TGTTTCTCGC TTGAAGCGAG TTTTGGAGGA TGGAATGACT GTTAAGGAGA ATAAGGCTCC TGTATTGGAT TCTAATAAAA GGCTGAAAAT GCTTCAGGAT CCGGTTTGTG GAGAGAAGAA AGAAGTAAAC GAAGGAACCA AATTTGAGTG GCTTGAGCCT TCTCGAATCA GGGATGCTAA TAGAAGACGG CCTGATGATC CACTTTACGA CAGAAAGACC TTATACATAC CACCTGATGT TTTCAAGAAA ATGTCTGCGT CGCAAAAGCA ATATTGGAGT GTTAAGAGTG AATATATGGA TATTGTGCTT TTCTTTAAAG TGGGAAAGTT TTATGAGCTG TATGAGGTAG ATGCGGAGTT AGGTCACAAG GAGCTTGACT GGAAGATGAC CATGAGCGGT GTGGGAAAAT GCAGACAGGT CGGTATCTCT GAAAGTGGGA TAGATGAGGC AGTGCAAAAG CTTTTAGCTC GTGGATATAA AGTTGGACGA ATTGAGCAGC TAGAAACATC TGACCAAGCA AAAGCCAGAG GTGCTAATAC TATAATTCCA AGGAAGCTAG TTCAGGTATT AACTCCATCA ACAGCAAGCG AGGGTAACAT TGGGCCTGAT GCCGTCCATC TTCTTGCTAT AAAAGAGATC AAAATGGAGC TAGAAAAGTG TTCAACTGTG TATGGATTTG CTTTTGTTGA CTGTGCTGCC TTGAGGTTTT GGGTCGGGTC CATCAGCGAC GATGCATCAT GTGCTGCTCT TGGAGCTTTA TTGATGCAGG TTTCTCCAAA GGAAGTGGTA TATGACAGTA AAGGGCTATC AAGAGAAGCC CAAAAGGCTC TAAGGAAATA TACATTGACA GGGTCTACGG CGGTACAGTT GGCTCCAGTA TCACAAGTAA TGGGGGATAC AGATGCTGCT GGAGTTAGAA ATATAATAGA ATCTAATGGA TACTTTAGAG GTTCTTCTGA GTCATGGAAC TGTGCTGTTG ATGGTCTAAG TGAATGTGAT GTTGCCCTTA GTGCTCTTGG AGAGCTAATT AATCATCTGT CTAGGCTGAA GCTAGAAGAT GTACTTAAGC ATGGAGATAT TTTTCCATAC CAAGTTTACA GGGGTTGTCT CAGAATTGAT GGCCAGACGA TGGTAAATCT TGAGATATTT AACAATAGCT GGGATGGCGG TCCTTCAGGC AAACACAGAA GGAAATATTC TACTACTTGG TATGGATCTT TAGTAAGGAC CTTGTACAAA TATCTTGATA ACTGTGTTAG TCCAACTGGT AAGCGGCTCT TAAGAAATTG GATCTGCCAT CCACTCAAAG ATGTAGCAAG CGTCAATAAA AGGCTTGATA TAGTTGAAGA ATTCACGGCA AACTCAGAAA TTATGCAAAC CACCGGCCAG TATTTTCACA AACTTCCAGA CTTAGAAAGA CTGCTCGGAC GCATTAAGTC TAGCGTTCAA TCATCAGCCT CTGTTTTGCC TGCTCTTCTG GGGAAAAAAG TGCTGAAACA ACGAGTTAAA GCATTTGGGC AAACTGTGAA AGGGTTCAGA AGTGGAATTG ATTTGTTGTT GGCTCTACAG AAGGAATCAA ATATGATGAG TTTGCTTTGT AAACTCTGTA AACTTCCTAT ATTAGTTGGA AACAATGGGC TAGAGTTATT CCTTTCTCAA TTTGAAGCAG CCATAGATAG CGACTTTCCA AATTATCAGA ACCAAGATAT GACAGAGGAG AATGCTGAAA CTCTTACAAT ACTTATTGAA CTATTTATCG AAAGAGTCAC TCAATGGTCT GAGGTCATTC ACATTATAAG CTGCCTCGAT GTCCTGAGAT CTTTTGCAAT CGCAGCAAGT CTCTCTGCTG GAAGCATGGC CAGGCCTGTT ATTTTTCCCG AATCAGAAAA TACAGATCAA AATCAGGAAA TAAAAGGGCC AATACTTAAA ATCCAAGGAC TATGGCATCC ATTTGCAGTT GCAGCTGATG GTCAATTGCC TGTTCCAAAT GATATACTCC TTGGTGAGGA TAGAAACCGC AGCAACAGCA TTCATCCTCG GTCCTTGTTA CTGACAGGAC CAAACATGGG TGGAAAGTCA ACTCTTCTTC GTGCAACATG TCTTGCCGTT ATCTTTGCCC AACTTGGCTG CTATGTGCCA TGTGAGTCTT GCGAAATCTC CCTTGTGGAT ACTATCTTCA CAAGGCTTGG TGCATCTGAT AGAATCATGA CAGGAGAGAG TACCTTCTTG GTAGAATGCA CTGAGACGGC ATCAGTTCTT CAGAATGCAA CTCAGGATTC ACTAGTAATC CTTGACGAAC TGGGCAGAGG AACTAGTACT TTCGATGGAT ACGCCATTGC ATACTCGGTT TTTCGTCACC TGGTAGAGAA AGTCCAGTGT CGGATGCTCT TTGCAACACA TTACCACCCT CTCACCAAGG AATTCGCGTC TCACCCACGT GTCACCTCGA AACACATGGC GTGCGCATTC AAATCAAGAT CTGATCAAGC ACCACGTGGC TGTGACCAAG ACCTAGTGTT CTTGTACCGT TTAACCGAGG GAGCTTGTCC CGAGAGCTAC GGACTTCAAG TAGCCCTCAT GGCTGGAATA CCAAACCTAG TGGTTGAAAC AGCATCAGAC GCTGCTCAAG CCATGAAGAG ATCAATTGGC GAAAACTTCA AATCAAGTGA GCTAAGGTCT GAGTTCTCAA GTCTGCATGA AGACTGGCTC AAGTCATTGG TAGGTATCTC TCGAGCCGCC CACAACAATG CCGCCATTGG CGAAGATGAC TACGACACTT TGGTTTGCTT ATGGCATGAG ATCAAATCTT CTTACTGTGT TCCCAAATAA CACTATCTGA AGCACGTTAA GTTTTT |
| Length | 3386 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 11088923.. 11094536 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G24495.1 |
| Description | MUTS homolog 7 |
| TAIR curator summary | encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2*MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts. |
| Alias | [ATMSH7][MSH6-2][MSH7][ARABIDOPSIS THALIANA MUTS HOMOLOG 7][MUTS HOMOLOG 6-2][MUTS homolog 7] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 7.54983 |
Ahg925289 | O-Glycosyl hydrolases family 17 protein |
| 12.6491 |
Ahg908084 | Zinc finger (C3HC4-type RING finger) family protein |
| 16.6132 |
Ahg475864 | DNA polymerase alpha 2 |
| 20.199 |
Ahg495232 | cleavage and polyadenylation specificity factor 160 |
| 28.7054 |
Ahg490253 | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain |
| 28.931 |
Ahg487399 | Transducin/WD40 repeat-like superfamily protein |
| 30.249 |
Ahg927897 | Plasma-membrane choline transporter family protein |
| 39.5095 |
Ahg335111 | ATP binding microtubule motor family protein |
| 42.332 |
Ahg359673 | BRCT domain-containing DNA repair protein |
| 43.8178 |
Ahg896890 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
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| Growth Chamber expression |
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