| Annotation |
|---|
| Description | jgi|Araly1|908084|Al_scaffold_0002_1165 |
| Sequence |
ATGGCGCCTG AAGCTCAGTT TCCTTGCGAC GGAGACGGTG TATGTATGCG GTGCCAGGTG AAACCTCCGG CAGAAGAGAC TCTCACGTGT GGCACGTGCG TCACGCCTTG GCACGTGTCG TGTCTCCTTC CAGAATCACT CTCTTCTTCC ACTGGAGAGT GGCAGTGTCC CGATTGCTCT GGCGATGTCG TTCCCTCCGC CGTTCCGGTT ACCGGAAACG CTAACGCTGG ACTTGAATCA TCCGGTTCAG TTCTCGTAGC AGCGATCCGT GCGATTCAGG CTGATGTGAA TTTGACGGAA GCTGAGAAAG CCAAAAGGAG GCAGAAACTG ATGAGTGGTG GTGGTGACGA TCGTCTCGAT GAAGAAGACA AGAAGAAGCT AGAAATCTTT TGTTCTATTT GCATTCAATT GCCAGAAAGA CCTATCACGA CACCGTGTGG GCACAACTTC TGCTTGAGAT GTTTCGAGAA ATGGGTAGGT CAAGGGAAGC TAACTTGTGT GACATGCCGA ACCAAAATTC CGAAAAATGT GGCGCAAAAT CCTCGCATCA ACTTAGCTCT AGTCTCTGCT ATTCGTTTAG CAAGTGTTAC CAAATGTTCT GTTGATGCAA CTGCGGCCAA GGTTCATCAT ATTATCCGCA ACCAAGACCG TCCTGAGAAA GCCTTTACTA CCGAGCGGGC TAAAAAGACT GGGAAAGCTA ATGCTGCTAG CGGAAGGATT TATGTCACAG TACCTGGTGA TCATTTTGGT CCCATACCAG CTGAAAATGA TCCCACTAGG AATCAAGGTG TTTTGGTTGG AGAATCTTGG GTGGACAGGC AAGAATGTAG GCAGTGGGGA GCTCATTTCC CGCATGTTGC TGGCATTTCC GGGCAATCAG CGGTTGGAGC TCAGTCTGTG GCGCTCTCTG GAGGTTATGA TGATGATGAG GATCATGGTG AATGGTTTCT CTACACAGGA AGTGGTGGAA GGGATCTCGG AGGAAACAAA AGAACTAACA AGATACAGTC TTCTGACCAG TCGTTTGCAA AAATGAATGA AGCTCTAAGA CTTAGTTGCA AAATGGGCTA TCCTGTCCGA GTTGTCAGGT CTCACAAGGA GAAGCGTTCT GCATATGCCC CTAAGGAAGG AGTGAGATAC GATGGGGTCT ACCGAATCGA GAAGTGCTGG AGCAACGTTG GAATACAGGG TTCTTATAAG GTCTGTCGTT ACTTGTTTGT TAGATGTGAC AATGAGCCAG CTCCATGGAC CAGTGATGAG CATGGCGATC GTCCAAGACC TTTGCCTAAT ATTCCAGAGC TTAAGAAAGC TACTGACCTG TTTGTGAGAA AGGATAGTCC ATCATGGGAT TTCGATGAAG CTGAGGGTCG TTGGAAATGG ATGAAGTCTC CACCTGTTAG CAGAAAGGCT GTTGCTGCTT TGGATCCTGA GGAGAGGAAG ATCATTAGGA AAGCAAAAAA CGGAAATAAC AGACTTCTCA AAGAATTCGG CTGCCAAATC TGTCGGAAAG TGCTGAGTTT TCCAGTGACG ACCCCTTGTG CTCACAACTT CTGCAAAGCA TGCCTGGAAG CTAAATTTGC TGGGGTCTCT CAAGTGAGAG AGAGAAGCAG AGGCGGGCGC ACACTACGTG CAAAGAAGAA CATAATGACC TGTCCGTGCT GCACTACCGA CCTCTCCGAC TTTCTTCAAA ACCCGCAGGT GAATAGAGAA ATGATGGAAG TTATCGAAAA TCTGAAGAAG AAAGAGGAAG AGGCTGAATC AAGCACAGAC ATTGCAGAGT CTTCTGGAGG AAACAACACC GAGTCTGAAG AAGAAGAAAC TCAGACTGTG TCTGAAGTTG AACCACCAAC GAAGAGGATC AAATTGTAG |
| Length | 1869 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 9980811.. 9983697 |
| Download Sequence |
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| A.thaliana |
|---|
| AGI-code | AT5G39550.1 |
| Description | Zinc finger (C3HC4-type RING finger) family protein |
| TAIR curator summary | Encodes the VIM3/ORTH1 protein that is similar to VIM1. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. This protein functions as an E3 ubiquitin ligase in vitro with members of the UBC8 family E2s. Either of the two RING domains present in the protein can promote ubiquitylation in vitro, but, not the PHD domain. Over-expression of ORTH1/VIM3 leads to decreased levels of FWA methylation, increased levels of FWA transcripts, and delayed flowering. Cen180 repeats are also hypomethylated in plants overexpressing this protein. |
| Alias | [ORTH1][VIM3][ORTHRUS 1][VARIANT IN METHYLATION 3] |
| Gene coexpression |
|---|
| MR |
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| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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