Detail



ID : Ahg480698

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|480698|fgenesh2_kg.3__3399__AT2G17980.1
Sequence
ATCACTGATT TCTGGGTTTG AAGTTTCTCT AGATCGATTT TAGATTTAGA TCCCTTTGTT TCTACTGCTT TTTATCGTTC AGAGAGGAAT AGCTCAGAAT TTGACAAGGT TTTTTTGCTC TCTAATCCAC CGAATCTCAA GCTTCCATGG CTCTCAATCT CCGTCAGAAA CATACTGAAT GTATAATCCG GATGCTGAAT CTGAACCAAC CTTTGAATCC AAGTGGAACT GCAAACGAAG AAGTTTACAA GATCTTGATC TACGACAGAT TCTGTCAGAA CATTCTATCT CCATTGATCC ATGTCAAGGA TCTGCGTAAA CATGGAGTTA CACTTTACTT TCTCATAGAC AAAGATCGAA GACCCGTTCA CGATGTTCCC GCTGTGTACT TTGTTCAACC CACTGAATCT AACATCCAGA GGATCATAGC TGATGCTTCT AGATCTCTCT ACGATACCTT TCATCTGAAT TTCTCGTCTT CGATCCCTCG CAAGCATCTT GAGGAGCTAG CTTCTGGGAC TCTTAAATCT GGTTCTGTTG AGAAAGTCTC GAAAGTGCAT GATCAGTATT TGGAGTTTCA ATCTACCTAT GTTCGGATGA ATGACCCATC AGCAGGGGAT AAAGAGATTG AAGAGATTAT CGAAAGGGTC GCTAGTGGTT TGTTTTGTGT GTTGGTAACG CTTGGTGTGG TTCCTGTTAT CCGGTGCCCT CGTGGTGGAC CTGCGGAGAT GGTGGCGTCT TTGTTGGATC AGAAACTGAG GGATCATCTC TTGTCCAAGA ATAATCTGTT TACTGAAGGT GGCGGTTTCA TGAGCTCGTT TCAGCGTCCG CTCTTGTGCA TTTTCGATAG GAACTTTGAG CTCTCGGTTG GGATTCAGCA TGATTTCAGA TACCGGCCTC TTGTTCACGA TGTTCTCGGG TTAAAGCTGA ACCGATTGAA CGTGCAAGGA GAGAAAGGTG GAATGAAATC GTTTGAGCTG GACAGTTCCG ACCCATTCTG GTCAGCTAAC AGTTCTCTAG AGTTTCCAGA AGTCGCTGTG GAGATTGAAA CCCAGTTGAA CAAGTACAAG AGAGACGTTG AAGAGGTTAA CAAGAGAACC GGAGGTGGGA GCGGGGCTGA GTTTGACGGG ACAGATCTGA TTGGAAACAC CAAACATCTC ATGAACGCTG TGAACTCACT CCCAGAATTA ACTGAGAGAA AGCAAGTGAT TGACAAACAC ACCAACATTG CAACCGCGCT CTTAGGACAG ATCAAGGAGA GATCTATTGA CGCTTTCACT AAGAAAGAAA GCGACATGAT GATGAGAGGC GGAATCGACA GAACCGAGCT TATGGCTGCT CTGAAAGGCA AAGGGACAAA GATGGACAAG CTCCGGTTTG CAATCATGTA CTTGATCTCC ACAGAAACCA TAAACCAATC CGAAGTCGAA GCCGTGGAAG CAGCATTGAA TGAAGCTGAG GCTGACACAA GCGCGTTTCA GTACGTGAAG AAGATCAAAT CCTTAAACGT ATCTCTTGCA GCATCTTCGG CAAACTCAGC GAGCAGAAGC AACATTGTAG ACTGGGCTGA GAAGCTTTAC GGACAGTCTA TAAGCGCAGT CACTGCAGGA GTCAAGAATC TGTTATCTAG TGATCAACAA TTGGCAGTGA CTCGAACCGT TGAAGCTTTA ACGGAAGGAA AACCAAACCC GGAGATCGAT TCTTACCTCT TCCTGGACCC AAGAGCTCCA AAGTCGTCTA GCTCCGGTGG TAGCCACGTG AAGGGACCGT TTAGAGAAGC TATAGTGTTC ATGATCGGTG GAGGTAACTA TGTTGAATAT GGAAGTTTGC AGGAGCTGAC TCAGAGACAG TTAACCGTTA AGAACGTAAT TTATGGAGCC ACTGAGATTC TTACCGGAGG TGAATTGGTG GAGCAGCTTG GCGTTTTGGG AAAGAAGATG GGATTGGGAG GTCCGGTCGC TTCAACGTCA TTGTCTGGTC ACTGAGTGTT ACACACTGTT GCCTTTCATT TTTCTTTTGC CTTTTCAGAG ACTTTTTTTT TTAATCTATA AAAATCCCCA GTGGTGTTAT TTAACAAACA GTTCAGTCTC GTTAAAAAAA TTTCTGGTGT GTTTATAATT CCATT 
Length2125
Protein Sequence
Protein Residue
Map Locationscaffold_3: 21119181.. 21121595
Download Sequence
A.thaliana
AGI-codeAT2G17980.1
DescriptionSec1/munc18-like (SM) proteins superfamily
TAIR curator summarymember of SLY1 Gene Family
Alias[ATSLY1]
Gene coexpression
MR
MR Locus Description
9.27362 Ahg482837 AMP deaminase, putative / myoadenylate deaminase, putative
19.0788 Ahg940990 Protein kinase superfamily protein
19.4679 Ahg949357 Galactose oxidase/kelch repeat superfamily protein
25.923 Ahg495812 DNA ligase IV
32.6343 Ahg473745
32.9393 Ahg350108
34.176 Ahg891152 aconitase 3
34.4674 Ahg475282 vacuolar protein sorting 34
37.7359 Ahg473269 cation-chloride co-transporter 1
37.7889 Ahg942216 chloride channel D
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression