Detail



ID : Ahg485999

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|485999|fgenesh2_kg.5__1991__AT3G55660.1
Sequence
AATAACTACT ATTCTTCTTC TTCTCTATGA TCTCTGCTTC CTTGTTTCTG GGTATCTAAA AAAAATCAAT CTTTTTTTTT GTTTTTGTTA GCGAAAATGG AGAATAATAG CTGTATTGGG TTTGAAGGGT CGAGAAGATT TGGTGAGAGT AAACGTATCA TTGGTTTGAT TGACTCAGTG ACTGAGTCAA CGACTGATTC AAGTCTTAGC AGCTCAAGTT GCGGTGCTGG ATCGAGCTCC GGGAGGTCTT CTGTGGCGGA GAGATCTGTT TCTTCTCCGT CATCTCCTCC GACGAAATCG CAGATCCTTG GATGGCCGTT AGGGCAAGGC TCATGGAGGA AGAGTTCTGG TAAAATGAAG AAGAAAACTC CGACAAAGAT CGATGATTTC GGGTTTAAGA GAGTTGGAAC AGAGACTTCA GAGATTGAGT TGTTGAAAGA GAGAATGGCG AAGTTGTTGC TTGGTGAAGA TATGTCTGGT TCTGGTGAAG GAGTTTGTCC TGCTTTGGCT ATTTCAAACG CCATTACCAA TCTCTATGCT GCAATATTGG GACAACAATG GAGGTTAGAG CCAATCCCTA GTGAGAAAAA ATCAATGTGG AGAAGAGAAA TCGAAGTTCT TCTTTCTGTT AGTGATCACA TTGTTGAATT GGTACCTTCC TTTCAGAATT TCCCCAATGG AAACAAGATT GAGGTGATGA ATTGCAGACC AAGATCAGAT CTCTTTACTT GTCTTCCTGC TCTTAGGAAG CTAGACCATA TGCTTATTGA AATATTAGAT AGTTTTGGAG AAACAGAGTT CTGGTACGTT GATCAAGGAA TCGTAGCTGC GGAATCTGCA AGGTCTAACT CTTTCCGTGA AGACGGAGAC AAATGGTGGC TTCCGCTGCC GCGTGTGCCA TCCGATGGAC TTACTGAGCA ATCTAGGAAG AAACTGGATC ATACTCGCGA ATTTACTAAC CAAATCTTGA AAGCTTGTAT GTCAATCAAC AGCATTGCTT TAGCTGAAAT GGAGGTTCCA CAATCATACC TTGAAGCTCT TCCAAAGAAC GGGAGATCAT GCCTTGGCGA TTTTCTATAT AGAAACATCA CATCGGATAA CTTCTCAGCA GATCACTTGC TGGAATCAAT AGATCTTTCA TCTGAGCTTG CCCTTGTAGA AATGGCGAAC CGAGTAGAAG CATCAATGTA CGTTTGGAGG CGAAGAGCTC ACTCGAGGCA TCTGATTTCT CTGTATCGGT CCACAAGTAC AAGATGGGGG ATGATAGTGA AGGAGATGAT GATGCATCAA ACCGATGGTG ACAAAAGGGA AATATTTGCG GAAAGAGCAG AAAGCTTATT GATCCGTCTC AAGCAACGTT TCCCGGGACT TAGACAAACA GCTTTAGACA CAAGCAAGAT CCAATACAAC AAGGATGTAG GAAAGTCTAT TCTTGAGAGC TACTCAAGGG TATTAGAGAG TTTAGCGTAT AGCATTGGTG TACGCATAGA GGAAGTGTTG TTCATGGATG ACATCAGCAA AGATGATGGT GATGATGATT CTTGTTCAGA CAAGTTGAGA TTGTTGTCTA AAGAAGCAGC TAATGGTGGC TCAGGCTCTC TAAGAAAGAA ACTTTCTGCC CCATCGTTGT TCTCTGTGTC ATTCTCAGGC ACGTCAACTC CGTACAGAAC TCCATCTTTC TCTGCATCAA CTCCAAGTTA TTCACCAATG CCGTTGATAA GCCCCATCAA CGGAGGAAGA GGAGGAGAAA GAGCACCGTT TCTCTCTGGG AGGAACATTA GAGAACGTTG TGGGTTTGGT CCAAAGAAAG CATTGGCCAA TTATCTCCGG GGTTGAATGT TATGTTAAAG AATTTGGATT TACATTTTCT TTTGTCTGTA TCACACAACA CGTTCTTTAT GTTGTTGTTG T 
Length1911
Protein Sequence
Protein Residue
Map Locationscaffold_5: 16632814.. 16635193
Download Sequence
A.thaliana
AGI-codeAT3G55660.1
DescriptionROP (rho of plants) guanine nucleotide exchange factor 6
TAIR curator summaryEncodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Alias[ATROPGEF6][ROPGEF6][ROP (rho of plants) guanine nucleotide exchange factor 6]
Gene coexpression
MR
MR Locus Description
6 Ahg477561
11.1803 Ahg494222 Pectin lyase-like superfamily protein
12.3288 Ahg324277 UV-B-insensitive 4-like
12.6491 Ahg942974 HMG (high mobility group) box protein
14.0712 Ahg490341 glycosyl hydrolase 9B13
18.4662 Ahg472419 Plant protein of unknown function (DUF869)
18.4932 Ahg917240
19.8242 Ahg492019
20.4939 Ahg487987 myb domain protein 3r-4
20.9045 Ahg929588 phragmoplast orienting kinesin 1
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression