| Annotation |
|---|
| Description | jgi|Araly1|486188|fgenesh2_kg.5__2180__AT3G57430.1 |
| Sequence |
ATGTCATGTC CTCTTGCCTT CACCTTCTCT CTCCCGTTTC CTTCTCAACC GCTTCCATTT TCCCGCCAGA AACATCCTTA CCTTCTTCGT GCCACACCAA CCTCTGTAAC CGACGATGTT GCCTCCACCG TTTATGGCGC ACCTTCGAAA TTTATCTCTC AATCACACTC TCCGGAGTGG TGGATTGACT TGCTCCGGTC CAAAGTTCGA TCTAATTTGC TCCGTGAAGC CGTCTTGACT TACATTGACA TGATTGTTTT GGGTATAAAA CCCGATAATT TTGCGTTCCC TGCTTTGCTA AAGGCTGTCG CTGATCTTCA GGACATGGAT TTGGGGAAAC AGATTCATGC CCATGTATAT AAATTTGGGT ATGGAGTGGA TTCCGTGACT GTAGCTAATA CCCTAGTGAA TTTGTATAGA AAGTGTGGAG ATTTCGGGGC TGTGTATAAG GTGTTCGATA GAATATCTGA GAGAAACCAA GTCTCTTGGA ATTCTTTGAT TTCTTCTTTG TGTAGTTTTG AGAAGTGGGA AATGGCGTTA GAAGCATTTC GGTGTATGTT GGATGAAAAT GCGGAGCCTA GTTCGTTTAC CTTGGTGAGT GTGGCTCTTG CTTGCTCGAA TTTGCCTATG CCCGAGGGAT TATTGATGGG TAAGCAGGTT CACGCCTATA GTTTGAGAAA GGGTGAATTG AATTCGTTTA TTATCAACAC ACTGGTGGCT ATGTATGGTA AAATGGGAAA ATTAGCATCT TCCAAAGTCT TGCTTGGATC TTTTGAAGGC CGTGACTTGG TCACATGGAA CACTGTGTTG AGCTCGTTAT GTCAGAACGA GCAGTTTCTT GAAGCATTGG AGTATTTGCG GGAAATGGTG CTTGAAGGTG TTGAACCAGA TGGCTTCACT ATTTCAAGTG TTCTTCCTGC TTGTTCACAC TTGGAGATGC TTCGCACAGG GAAAGAATTG CATGCCTATG CTTTGAAAAA TGGCTCTTTG GATGAGAATT CTTTTGTTGG CAGTGCTTTG GTTGACATGT ATTGCAATTG CAAGCAAGTG TTGAGTGGTT GTCGAGTATT TGATGGAATG TTTGATAGAA AGATTGGTCT ATGGAATGCT ATGATCACTG GTTATGCCCA GAACGAGTAT GACGAGGAAG CGTTGTTGCT GTTTATTGAA ATGGAAGAAA GTGCTGGGCT TCTGGCTAAC TCAACCACAA TGGCAGGTGT TGTTCCTGCT TGTGTTCGTT CTGGTGCGTT CTCCAAAAAG GAAGCTATCC ATGGATTTGT TGTAAAAAGA GGTTTAGATA GAGACAGGTT TGTGCAGAAT GCACTGATGG ATATGTATTC TAGGCTGGGA AAGATCGATA TCGCCAAGCG TATATTCGGT AAAATGGAAG ATAGAGATTT AGTTACATGG AACACAATGA TTACGGGTTA TGTATTCTCA GAACTCCATG AGGACGCGCT TCTTATGCTA CACAAGATGC AAATCCTCGA AAGGAAAGCA AGCGAGCGAG CTAGCCGAGT TGGTCTTAAA CCTAATTCCA TCACTCTGAT GGCAATCCTT CCCAGTTGTG CTGCACTATC AGCATTAGCA AAAGGAAAAG AAATCCATGC TTACGCCATC AAGAACAATT TGGCAACTGA TGTGGCTGTA GGAAGCGCTT TAGTTGACAT GTACGCAAAA TGCGGGTGCC TACAGATGTC GAGAAAAGTT TTTGATCAGA TTCCTATCAG AAATGTTATA ACCTGGAATG TGATTATAAT GGCTTATGGG ATGCACGGGA ACAGCCAAGA TGCCATAGAT ATGCTAAGAA TGATGATGGT TCAGGGAGTA AAACCAAACG ATGTTACATT CATTTCAGTA TTTGCAGCTT GTAGCCACTC AGGCATGGTG AATGAAGGAT TAAAGATTTT CTACAATATG AAGAAGGACT ACGGTGTTGA GCCTAGCTCA GATCATTATG CTTGTGTTGT AGATTTGCTA GGAAGGGCAG GTAGAGTCAA AGAAGCTTAT CAACTCATCA ACCTGATTCC TCGAAATTTC GACAAAGCTG GAGCTTGGAG TAGCCTCCTT GGTGCTTGTC GGATTCACAA TAACCTAGAA ATTGGAGAAA TTGCTGCTCA GAACCTCATT CAATTGGAAC CAAATGTAGC TAGTCACTAT GTACTACTTG CCAATATATA TTCATCAGCA GGCCTCTGGT ATAAAGCAAC AGAGGTAAGG AGAAATATGA AAGCGCAAGG CGTGAGAAAA GAACCTGGAT GTAGCTGGAT TGAGCATGGC GATGAAGTAC ATAAATTCGT AGCCGGTGAC TCATCTCACC CGCAAAGCGA AAAGCTCCGT GGATATCTAG AGACCTTGTG GGAGAGAATG AGAAAAGAAG GATATGTACC TGACACATCT TGTGTGCTTC ACAATGTAGA AGAAGATGAA AAAGAGATTC TGCTTTGTGG ACACAGTGAG AAGCTAGCAA TTGCGTTTGG GATACTTAAC ACATCTCCGG GTACGGTTAT TAGGGTGGCT AAAAACCTCA GGGTTTGTAA TGACTGTCAT CTTGCAACAA AGTTTATCTC AAAGGTTGTT GACAGAGAAA TCATCTTGAG AGATGTTAGG AGGTTCCATC ATTTCAAGAA TGGAAGTTGC TCCTGTGGAG ACTATTGGTG AAAGACTAGC TGCATAAAA |
| Length | 2679 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 17393407.. 17396084 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G57430.1 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| TAIR curator summary | Encodes a chloroplast RNA editing factor. |
| Alias | [OTP84][ORGANELLE TRANSCRIPT PROCESSING 84] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.32456 |
Ahg480130 | CCCH-type zinc fingerfamily protein with RNA-binding domain |
| 12.49 |
Ahg476439 | |
| 28.5657 |
Ahg336171 | toprim domain-containing protein |
| 36.8646 |
Ahg930806 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 38.5746 |
Ahg493302 | |
| 39.3446 |
Ahg906386 | oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding |
| 41.1582 |
Ahg471265 | Pentatricopeptide repeat (PPR) superfamily protein |
| 43.6807 |
Ahg479727 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 45.8258 |
Ahg489009 | methionine synthase 3 |
| 67.7495 |
Ahg484275 | Asparagine synthase family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|