Detail



ID : Ahg488438

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|488438|fgenesh2_kg.6__1572__AT5G15900.1
Sequence
ATGGAGCTTC TTCATTCTGC AACATTTCCA AGTAAACAAA AGCTACTCAT CGTAGTGACA GTTGCCATAA CTCTCTTCAC CATCATCCCT CTTCTCTACC CTTTTCTTGA AGACCCTAAC TTCTTCCTCA AGCAACAACC TCCAAGCCAA AGCAGCATCA TCAAGCTCGA AAACGGCGTT GTAACATCAC ATGAGAGCTG CGACATATTC TCGGGAGAAT GGGTTCCTAA CCCTGAGGCA CCTTACTACA CCAACACGAC GTGCTGGGCG ATACACGAAC ACCAAAACTG CATGAAGTTT GGAAGACCCG ACACGGATTT CATCAAGTGG AAATGGAAAC CTTATGGGTG CGAAGATGGC TTGCCAGTTT TTGACCCGTT TAGGTTTCTT GAGATCGTGA GAGGTAAAAC CATGGCGTTT GTTGGTGACT CAGTTAGCAG AAACCACATG CAGTCTTTGA TCTGCCTTCT CTCTCAGGTT GAGTATCCGA TGGATGCTTC CGTTAAGGAT GACGATTATT TCAAACGATG GACATACGAA ACATACAACT TCACGATCGC CGCATTTTGG ACACCACACT TGGTAAAGTC CAAAGAACCC GACCAGACCC AGACCGAGCA TACTGATATT TTCGACCTAT ACCTCGACGA GGCAGACGAG AGTTGGACAG CCGATATAGG AGATTTTGAC TACGTGATTA TCTCATCTGG TCACTGGCAT TACCGGCCAT CAGTCTACTA CGAAAACCGG ACAATCACCG GTTGCCATTA TTGCCAATTA CCGAACATAA CCGATCTCAC AATGTTTTAC GGGTATAGAA AAGCGTTTAG AACCGCGTTT AAAGCGATCT TGGACTCGGA AAGCTTCAAA GGGGTAATGT ACTTACGAAG TTTTGCACCG TCGCATTTTG AGGGCGGGTT ATGGAACGAA GGAGGAAATT GTTTGAGGAA ACAACCTTAT AAGAGTAACG AGAGTCAAGA CGAAACGACA ATGAAGCTAC ACATGATTCA GTTGGAAGAA TTTTGGAGAG CTGAAGAAGA AGCGAAGAAG AAAGGGAAGA GGTTAAGACT ACTAGATACG ACCCAAGCAA TGTGGCTTAG ACCCGATGGT CACCCAAGCC GCTATGGCCA TATGCCAGAG GCCAATGTCA TGTTGTACAA CGACTGTGTT CACTGGTGCT TGCCCGGTCC TATCGACAAC CTCAATGACT TCTTGCTCGC TATGCTAAAG AGAGAACAAG ACAAAGGATT ACTGGCTCAA GTTCGGAAAA TGCTGTCCTA ATGACCTAGC CAAATCAAGT TT 
Length1302
Protein Sequence
Protein Residue
Map Locationscaffold_6: 6210051.. 6212535
Download Sequence
A.thaliana
AGI-codeAT5G15900.1
DescriptionTRICHOME BIREFRINGENCE-LIKE 19
TAIR curator summaryEncodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Alias[TBL19][TRICHOME BIREFRINGENCE-LIKE 19]
Gene coexpression
MR
MR Locus Description
16.3707 Ahg937443 F-box and associated interaction domains-containing protein
25.04 Ahg938158
33.4813 Ahg904265
50.9117 Ahg926138
53.2447 Ahg929620
55.4797 Ahg911831
55.8032 Ahg937226 RING/U-box protein with C6HC-type zinc finger
63.4035 Ahg932981
78.9937 Ahg472667
89.1628 Ahg477299 AGAMOUS-like 67
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression