Detail



ID : Ahg492066

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|492066|fgenesh2_kg.7__1499__AT4G27330.1
Sequence
CACACTTAAA GCTTTCGTCT TTACCTCTTC ACTTCTCTCT CTCTCTCTCT CTAAAAAGAG TTCCGAGAAC AAGATCATCA TCAATCAATG GCGACTTCTC TCTTCTTCAT GGCAACAGAT CAAAACTCCG TTGGAAACCC AAATGATCTT CTGAGAAACA CCCGTCTTGT CGTCAACAGC TCCGGCGAGA TCCGGACAGA GACACATAAG AGTCGTGGTC GGAAACCAGG ATCGAAGACA GGTCAGCAAA AGCAGAAGAA ACCGACGCTG AGAGGAATGG GTGTAGCAAA GCTCGAGCGT CAAAGAATCG AAGAAGAAAA GAAGCAAATC GCCGCCACAG TCGGAGAGAC GTCAGCAGCT TCGATCTCTA ACAACGCTAC CCGTTTACCC GTACCCGTAG ACCCGGGTGT TGTGCTACAA GGCTTCCCAA GCCCACTCGG AGGATGCAGA AGCAACAGGA TCTATTGTGG TGGAGTCGGG TCGGGTCAGA TGATGATCGA CCCTGTTTGT TCTCCATGGG GTTTTGTTGA GAGCTCCTCC ACTCATGAGC TCTCTTCAAT CTCAAATCCT CAAATGTATA ACGCTTCTTC CAATAATCGC TGTGACACTT GCTTCAAGAA GAAACGTTTG GATGGTGATC AGAATAATGT AGTTCGATCC AACGGTGGTG GGTTTTCGAA ATACACAATG ATTCCTCCTC CGATGAACGG CTACGATCAA TATCTTCTTC AACCAGATCA TCATCAGAGG AGCCAAGGTT TCCTTTATGA TCATAGAATC GCTAGATCAG CTTCAGTTTC TGCTTCTAGT ACTACTATTA ATCCTTATTT TAATGAGGCG ACAAATCATA CGGTACCAAT GGAGGAATTT GGGAGCTACA TGGAAGGAAA CCCTAGAAAT GGATCAGGAG GTGTGAAGGA GTACGAGTTT TTTCCGGGAA AATATGGTGA AAGAGTTTCA GTGGTGGCTA CATCGTCATC AGTCATAGGT GATTGCAGTC CTAATACCAT TGATTTGTCC TTGAAGCTTT AAATGTTTTA TCTTTCTATA TTTATTTTAA ACAAATCGTC TTTTTTTAAG TAGATGAAAG TAAGAAACAG AAGAAAAAAA AGACCCTTTT TTGGTGTATG CATCTGAGAG CTGGATCAAA AGAAAGATTC AGCTTTTGGA TTACCCTTTT GGTTGTTTAT TATGAGATTC TAACCTAAAC ACTCAGACAT ATATGTTCTG TTCTCTTCCT TAATTGTTGT CATGAAACTT CTC 
Length1263
Protein Sequence
Protein Residue
Map Locationscaffold_7: 5826520.. 5828032
Download Sequence
A.thaliana
AGI-codeAT4G27330.1
Descriptionsporocyteless (SPL)
TAIR curator summaryEncodes a putative transcription factor that is required for the initiation of both micro- and megagametogenesis and is expressed in the sporogenous tissue of the anther and the ovule. SPL is a chalaza identity gene that share overlapping functions in establishing the prospective chalaza of the ovule. It also plays a central role in patterning both the proximal-distal and the adaxial-abaxial axes in the ovule and generally interacts with YABBY proteins in vitro. Mutant is defective in the differentiation of primary sporogenous cells into microsporocytes, and does not properly form the anther wall. Regulator of anther cell differenctiation
Alias[NZZ][SPL][NOZZLE][SPOROCYTELESS]
Gene coexpression
MR
MR Locus Description
8.48528 Ahg916295
12.0416 Ahg493945 oleosin 2
13.4907 Ahg916823 Subtilisin-like serine endopeptidase family protein
13.9642 Ahg924952 RECQ helicase L4B
26.0768 Ahg922689 Protein of unknown function (DUF1184)
29.3939 Ahg472221 other RNA
31.1127 Ahg894843
33.4963 Ahg335919
38.1051 Ahg950073 C2H2 and C2HC zinc fingers superfamily protein
47.3709 Ahg344097
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression