Detail



ID : Ahg492489

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|492489|fgenesh2_kg.7__1922__AT4G23790.1
Sequence
TCTTCTTCAG ATGAAGCTGA AGTTGTCATC AATCTCCATG AATCATAAAA ATGTGCTTCT CATCAAGCTC ATCTCCGCTA TTCTGATCAC ATTTTTCGCT TTCCGTCTCT TCATTCTCCA CTCTAGCGAG TTTTCTCCAA TCTTTGCGTC GGTTACTGGA AAATTCGAAG CTCGGTTTTT GCCGCCGGAG GTTATTGTGC CGGAAAATGA AGATCTGATT CCTCAGGATA TTGAAGTAGA GAAGTGTGAT CTTTTCGCCG GAAAATGGAT CCCAGATTCA GTAGGACCAA TTTACACAAA CAACTCATGC GGATCGCTCA TTGACGGTCA CCAAAATTGT ATCACCAATG GCCGGCCTGA CTTAGATTTT CTCTACTGGA AATGGAAGCC TCATGACTGT TTGTTACCAC GTTTTGACCC TCGAAGATTT CTTCAACTTA TGAGGAATAA ATCTTGGGCA TTGATTGGTG ACTCCATATC GCGTAACCAC GTCGAGTCAC TGCTTTGTAT GCTCTCTACG GTTGAAGAAC CTGTTGAAGT ATACCACGAC AAGGAGTACA AATCGAAACG TTGGCATTTC CCTTTACATA ACCTTACTAT ATCCAACATT TGGTCACCAT TTCTTGTTCA AGCCGCTATT TTCGAAGATT CAAACGGTGT CTCGACCGCT TCTGTTCAGC TACATCTGGA TAAACTCGAT GAGACATGGA CCAATCTTAT GCCTAGCCTC GACTATGCGA TTATCTCAAC AGGTAAATGG TTTCTTAAAT CCGCGATTTA CCATGAAAAT GGAAAACCCG TCGGTTGCCA TAACTGCCAG GAAAAACCTC ACATAATAGA GTTAGGATTT GACTATGCTT ATAATGCATC GCTGCGGAAT GTCATGGACT TCCTAGCTGG GGAAGATAAT AGTAAAGGCA CGGTTTTTTT CCGGACTTCG ACTCCCGATC ATTTCCAAAA CGGGGAATGG CATAGCGGCG GGACATGTAA GCAAACAGAG CCGGTGAGCG ATGAGGAGAT TGAGATTAAG GATGTACATA AGATACTAAA AGACATTGAG ATTGGTCAGT TTAAGAGGGC GGTTAGAGAG AAGACTGGCC AGGATGGTGG AAATCTAAAG CTTTTGGATT TCACCGGGAT GTTGCTGACC CGACCTGATG GTCATCCGGG TGCGTACCGA CAATTCAGGC CGTTTGATAA AGACAAAAAT GCAAAGGTAC AAAACGACTG TCTGCATTGG TGTTTGCCTG GTCCGTTTGA TTACTTGAAT GATGTTATAT TGGAGACCAT AGTAAATGGC TGAACCGGAC CACCAAAATG TGATTGGTAC ATCGCCAATC GAAAACCGGT TCTCTGGAGT TACATAGTCT AATACGGCGC AAATTTGTGT GAATTGGAAA CATGTAAAAT TATGTAAGAA AATTTGAGAT AATGTG 
Length1436
Protein Sequence
Protein Residue
Map Locationscaffold_7: 7343483.. 7345320
Download Sequence
A.thaliana
AGI-codeAT4G23790.1
DescriptionTRICHOME BIREFRINGENCE-LIKE 24
TAIR curator summaryEncodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Alias[TBL24][TRICHOME BIREFRINGENCE-LIKE 24]
Gene coexpression
MR
MR Locus Description
17.3205 Ahg480833 thioredoxin domain-containing protein 9 homolog
26.096 Ahg918021 ARM repeat superfamily protein
38.923 Ahg330654 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
39.3065 Ahg947625 DHHC-type zinc finger family protein
42.5088 Ahg942922 UDP-D-glucose/UDP-D-galactose 4-epimerase 5
48.0833 Ahg939416 PATATIN-like protein 9
55.5968 Ahg486233 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
56.3915 Ahg480817 subtilisin-like serine protease 3
62.8649 Ahg921665 Eukaryotic aspartyl protease family protein
78.9937 Ahg488402 longifolia1
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression