| Annotation |
|---|
| Description | jgi|Araly1|493053|fgenesh2_kg.7__2486__AT4G18140.1 |
| Sequence |
AAAAAAAACC AGAGAGAAGG AAAAAAAAAA AAACTCTTGC TTCTTCAGGT TGGTCTTCTT CTTCCTGAGC TCAATCTAGT TCTTGGTGTT TTTATGCAAT TGTGATTATT AATGATCGGT ATTTAACGTT TCTTAGCAAT TTTATTTTGT TTTTATCGGT AGACTTGTGT TTGAGTTTGT GAAAATGATC AAAAATTCTA CTACAGATCT GTTTGTTTAT CTTACTAGAT TCTGTCTTCT TCATCAAGAA GCTGACTTTG TTTTGCAGCA TCGATCTTGA GACCATTCCT TTTGCAGACT ATGCCAATGC CATTTTTGAA AATGAAGAGC AAGATAAGCA AAGACTCGTT AAGAGAAAAA AGGGTTCTTG GTGTTTGTAA GAAATTACCT CATAAGGATT TAAAAAATTC ATGCTTTGAT TCCAAAATAT CGGAGAGAAT GGAACATTTG GTCACTGCTA CTCAGAATTG CCACAACAAT GAGGAACAAG ATTTAGGTTT GGATTCTTCT ACTAGGGATG TTGAAACAAA TGAACCTGAA GACCTGCAAG TTGAAGACAC TTCCAATAAT GCGTCGAATA TGGATACAAT ATTTTCACCT GTTCTGGATG ATGAACTGTA TTCAGAAACT GATCGAGTAT TTGTGGCAGG AAACAATGTG CAATGGGAAA TGCCTAGGTG GGGAGCTGAT GAGAGCAGCA GCAGCAATCA ATCTTGCAAC GATTCTGATT ACTTTCTTTC TGATGTGCTG ATTGCAAGCT TGCCATTTTA TGAGACTGGA AATGTTGATT TTTTCACTGA GATAAGTCCC TTGCCTCGTT GTATCTTTCC AGAGACAAGT GCGTTACTAG ATGTAGCTGA GCAGTACATG CTATTACCTT ACTTAGAAGA TGGATCAGCC AGCAGTGATG ATGTTAAGTC TGATGAGGAC AGCGGGGGTA ATGTCGATAA ACATGACATG TTTATGGCTT TCAACTGGTC AAGATCACAA AACTTGGAAG CTGCAGATGC TCACGCTGAA GCTGAACAAA CTGAAGATTT TGATCCTCAG CTTTTCTTAA GAAATCAACC GGAATTATCT GATGTCGTAT TCAATTATTT CCCTGATATG CAGCAGCCTA GGGAATCCCC GAAAAGGAAG GCGGTAACCC TTGTTCTCGA TTTGGATGTG ACATTGCAGA AACTCTGGTC CATTCGACTC TGGGAGCCTG CAGAGATACA GACTTTTCCT TCAGAGTGTC TTTCAATATG CAAGAGAACA CTGTTTACGT GAAACAAAGG CCACACCTTT ATAGGTTCTT AGAGAGGGTG GTTCAACTTT TTCATGTTGT CATCTTCACG GCTAGTCACA GCAATTATGC GTCTCAACTT CTAGATATAT TGGATCCAGA TGGGAAGTTT GTATCGCAAC GTTTTTACCG GGATTCATGC ATTCTTTCAG ATGGGATTTA CACCAAGGAT TTAACTGTTT TGGGTCTTGA TCTAGCAAAA ATGGCTATAA TTGACAACTG TCCACAGGTG TACAGATTGC AAATAAACAA TGGGATCCCT ATCAAAAGTT GGTACGATGA TCCAACTGAT GATGGTCTGA TTACATTACT TCCCTTCTTA GAGACATTGG CTGATGCCAA CGATGTTCGT CCTGTCATCG CCAAGAGATT CGATCATTGG AACAACAAGT TATTTTGATT AGGCGTAAGG AAGTGACCTG ACTTTGTTCT GCTCTGTGTT AACATGTATC TTAAGCTCCC TGACAAACTT GCCAATATGT AAATCTATAG AATGTTTAAC TTGTTTTCAT TAAAATTTG |
| Length | 1809 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 10317898.. 10320802 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G18140.1 |
| Description | SCP1-like small phosphatase 4b |
| TAIR curator summary | Encodes a SCP1-like small phosphatase (SSP). Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4). |
| Alias | [SSP4b][SCP1-like small phosphatase 4b] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 33.4963 |
Ahg494291 | Syntaxin/t-SNARE family protein |
| 34.3657 |
Ahg934965 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| 42.5206 |
Ahg496763 | |
| 55.2087 |
Ahg934176 | |
| 60.9918 |
Ahg322779 | Protein of unknown function (DUF707) |
| 73.8918 |
Ahg495340 | Heavy metal transport/detoxification superfamily protein |
| 79.8999 |
Ahg493559 | |
| 79.9375 |
Ahg929176 | RELA/SPOT homolog 2 |
| 82.801 |
Ahg489522 | Cam-binding protein 60-like G |
| 89.4148 |
Ahg471474 | RING/U-box superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
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