| Annotation |
|---|
| Description | jgi|Araly1|494291|fgenesh2_kg.8__107__AT5G46860.1 |
| Sequence |
CTTCTTCTTC TCAATTAATC AGTTACGAAC GCTTTTCAAT TTTTCGTCTA TCTGTCTCCA CGATCCACGC CTTGACCTTC GTTTTTTTTT TCTCAGAGAA AACTCCGATA AGCAATTTCT CAATCTCGTC GTAGATCGAA CTTTTCCAGA AAAAAAGAGT GGTTTCACGA AGAAGATGAG TTTTCAAGAT TTAGAATCGG GAAAAGGAAG ATCGACGAGG AAGATCAATG GTGGTCGACA AGATTCGACA CAAGCCGTTG CTTCTGGAAT TTTCCAGATC AATACCGGAG TCTCCACGTT TCAACGACTC GTTAACACAC TTGGTACTCC TAGAGATACA CCGGAGCTCC GGGAGAAGCT GCACAAGACA AGATTGCATA TTGGACAGCT TGTGAAGGAT ACTTCAGCTA AACTTAAAAT AGCTAGTGAA ACTGATCATC AAAGTGGTGT CAATCCAAGT AAGAAGATTG CAGATGCTAA GCTTGCAAGG GACTTTCAAG CTGTTTTAAA AGAGTTTCAG AAAGCTCAAC AAACTGCTGC TGAAAGAGAA ACCACTTATA CTCCTTTCGT GCCTCAATCC GCTCTTCCCT CTAGTTATAC GGCGGGTGAG GTAGATAAGG TCCCGGAACA GCGGGCACAA GTTCAGGAGT CAAAGAGGCA GGAACTTGTA TTGTTAGACA ACGAGATTGC ATTCAATGAA GCTGTGATCG AAGAAAGAGA GCAAGGAATA CAAGAAATCC ATCATCAGAT TGGCGAGGTT AACGAGATAT TCAAAGATCT TGCGGTTCTG GTTAATGATC AAGGAGTCAT GATAGATGAT ATCGGTACTC ACATTGACAA CTCCCGTGCT GCAACTTCAC AAGGAAAATC TCAGCTGGCG CAAGCCGCGA AAACACAAAG ATCAAACTCA TCTCTGACAT GCTTGCTCTT GGTGATATTT GGCATTGTTC TCCTGATCGT GATTATCGTA CTTGCGGCTT GATTTCGAAA GAGCAACAAC AAGTCGCTTG GGTGTGTTCA TCGATTTTAA AGCATCGAAG AGTTGAACTA CTTGGTATAT AATATATGTT GAAGACAACA CTTAGAAGTT GGTTTTGTGT TGGTTTGGTT TGGTTCGATT CGGTTTGAAG GTTCTATTGG TTAATGTAAT AGTGTGTGCG TGTGCGTGTG GCTTTTTTGT TGTGTAAACA TTTTGTTGGA GATGACAGAA ATTCTGTTTT GTTTGTGATT CTCCTAAGTC CTAAATCTAA ATCTCTGTTG AGAGGAAACA AAAACGATTT GCTCAATGAC TGTCACAAAG AAGTTTGAAA CC |
| Length | 1312 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 649210.. 651176 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G46860.1 |
| Description | Syntaxin/t-SNARE family protein |
| TAIR curator summary | Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164–220) in which hydrophobic amino acid residues appear at seven amino acid intervals. Such regions have a high potential to form an amphiphilic a-helix, intriguing for the intermolecular interactions by forming coiled-coil structure. AtVam3p has a highly hydrophobic segment at its C terminus thus implicating it to be a membrane protein while the rest of the sequence is hydrophilic. |
| Alias | [ATSYP22][ATVAM3][SGR3][SYP22][VAM3][ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22][ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3][SHOOT GRAVITROPISM 3][SYNTAXIN OF PLANTS 22][VACUOLAR MORPHOLOGY 3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 12.9615 |
Ahg474776 | lipoxygenase 1 |
| 19.2873 |
Ahg491310 | CBS domain-containing protein with a domain of unknown function (DUF21) |
| 20 |
Ahg491819 | protein kinase family protein / WD-40 repeat family protein |
| 20 |
Ahg949022 | |
| 21.1187 |
Ahg928811 | senescence associated gene 20 |
| 23.3666 |
Ahg930298 | Ribosomal protein S5/Elongation factor G/III/V family protein |
| 28.4605 |
Ahg926973 | VPS35 homolog B |
| 31.4166 |
Ahg488059 | CRT (chloroquine-resistance transporter)-like transporter 3 |
| 33.2566 |
Ahg942396 | Na+/H+ exchanger 1 |
| 33.4963 |
Ahg493053 | SCP1-like small phosphatase 4b |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
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| The four seasons |
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| Growth Chamber expression |
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