Detail


ID : Ahg494350

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|494350|fgenesh2_kg.8__166__AT5G46240.1
Sequence
ATAACAAATG GGTCACAACA AGTTGCTATA AAGGTCCCAA CAGAAGAAGA AAAGAGAAGT TTGCCCGTGT CAATTTGTCA CAAGCTTCAT CACTATTTAT AACTACCTTG CCAAGAAGAT AGCCTAAAAA GGTATAACAG TTTCTTTGTC TATAGCGATC ATCAAAAAGA TGTCGATCTC TCGTACCCGA AATTTCTTCC AAAGATTCTG TGTCGAGGAA TACAATATAG ACACCATAAA ACAGAGTAGT TTCCTCTCTG CCGATCTTCT ACCATCTCTT GGAGCCAGAA TTAACCAATC TACTAAGCTC CGTAAACATA TAATCTCTCC TTTTAATCCA CGTTATAGAG CATGGGAGAT GTGGCTAGTC TTTCTAGTTA TTTACTCAGC TTGGATTTGC CCATTTCAAT TTGCTTTCAT CACCTATAAA AAAGACGCGA TTTTCATCAT CGACAACATT GTTAATGGCT TCTTTGCCAT AGATATTGTT CTCACCTTCT TTGTTGCGTA TCTCGATAGC CACTCCTATC TTCTAGTTGA CAATCCTAAG AAAATAGCAA TAAGGTACCT TTCGACATGG TTCGCTTTCG ATGTGTGTTC CACAGCACCA TTTCAGCCAC TGAGCCTCTT GTTTAACTAC AACGGAAGCG AACTAGAATT CAGAATTCTT AGCATGCTCA GATTATGGCG TCTCCGTCGA GTTAGCTCGC TGTTTGCAAG GCTTGAGAAA GATATTCGTT TCAACTACTT CTGGATACGG TGCACAAAAC TCATTTCGGT CACTTTGTTC GCTGTACATT GTGCTGGATG TTTCAACTAC CTGATTGCAG ATAGATATCC TAATCCAAGA AAGACATGGA TCGGTGCCGT GTATCCAGAT TTCAAAGAAG CAAGTCTCTG GACTAGATAT GTGACTGCTC TTTACTGGTC CATTACGACA TTAACGACCA CGGGATATGG AGATTTACAT GCTGAGAATC CAAGAGAAAT GCTTTTCGAC ATTTTCTTTA TGCTATTCAA CCTCGGTTTG ACAGCTTACC TCATTGGAAA TATGACCAAC CTCGTCGTTC AGTGGACTAG CCGAACCAGA ACCTTTAGGG ATACAGTGAG AGCTGCTTCA GAGTTTGCTT CAAGAAATCA ACTCCCACAT GACATACAAG ACCAAATGTT ATCACACATT TGCTTAAAGT TCAAAACAGA GGGCTTGAAA CAACAAGAGA CCTTGAACAA TCTGCCAAAA GCAATCCGGT CAAGCATTGC AAACTACTTA TTCTTCCCCA TTGTTCACAA CATTTACCTC TTTCAAGGAG TTTCTCGTAA CTTCCTATTT CAATTGGTTT CCGACATAGA CGCCGAGTAT TTCCCACCTA AAGAAGATAT AATTCTACAA AACGAAGCTC CTACTGATCT TTACATTCTG GTTTCAGGAG CAGTGGACTT CACATGCTAC GTTGATGGAC ATGATCAGAT TCAAGGGAAA GCAGTTATTG GAGATACGTT TGGAGAGGTT GGAGTTTTAT GCTATAGACC ACAACCATTC ACAGTAAGAA CAGCCGAGCT ATCTCAAATA CTACGGATAA GCAGAACATC GCTGATGAGC GCAATGCACA CTCATGCTGA CGATGGACGA ATTATAATGA ACAATCTATT CATGAAACTT AGAGGGCAAC AGTCAATAGC AATAGATGAT TCGAATAGTG GTCAAGAAAA CAGAGATTTT AAAAGCATGG TATGGGAAGA GTGGAGAGAT TCAAGAAAAG ATGGCTACGG TTTAGATGTG ACGAATCCGA CCTCCGATAA TGCTCTAATG GATGCAATTC ACAAGGGAGA TACTGAATTG GTTAAGAAGA TACTTAAAGA ACAAAAGTTA GAGAGAGCCA AAGAGGAAAG ATCAAATAGT GAAACCGCTG GAAGAGGTTA CGCAAACGAT TCACCGAAAA AAGATCCATA TTGCAGCTCA AGCAACCAAA TCATCAAGCC ATGTAAAAGA GAAGATAAGA GAGTTACCAT CCACATGATG TCAGAGCGCA AGAACGGGAA GTTGATACTC TTACCATCAT CCATTAAAGA GCTTCTAAGA CTTGCAAGTG AAAAGTTTGG AGGCTGCAGC TTCACAAAGA TAACCAATGC GGACAACGCC GAGATTGATG ATTTAGATGT GATTTGGGAT GGTGATCATT TGTATTTTTC ATCAAATTGA GTTTGAAAAC TCGACTTCAT TTATAGAGCA TGAATATCTT TTACTCGGCT TCATAGAAAA GT
Length2262
Protein Sequence
Protein Residue
Map Locationscaffold_8: 1081157.. 1084524
Download Sequence
A.thaliana
AGI-codeAT5G46240.1
Descriptionpotassium channel in Arabidopsis thaliana 1
TAIR curator summaryEncodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.5–0.6 μm diameter microdomains at the plasma membrane surface. KAT1 belongs to the Shaker family K+ channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).
Alias[KAT1][potassium channel in Arabidopsis thaliana 1]
Gene coexpression
MR
MR Locus Description
25.3772 Ahg946685
34.7707 Ahg495656 beta-amylase 4
49.1223 Ahg495722 expansin A14
51.8073 Ahg342616 AAA-type ATPase family protein / ankyrin repeat family protein
53.5164 Ahg943390 Homeodomain-like superfamily protein
54.4426 Ahg472718 ribonuclease 3
73.2393 Ahg474202 calcium-dependent protein kinase 33
77.4855 Ahg329707 potassium channel in Arabidopsis thaliana 2
80.4612 Ahg947531
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression