| Annotation |
|---|
| Description | jgi|Araly1|494728|fgenesh2_kg.8__544__AT5G42920.2 |
| Sequence |
AATGGAGGAC GGCGAAATAG AGGAAGGAAT GGTGACAACC GACGAATTCC CGACGCCGGA AGTAACCACA GAGACTACAC AACCACCGCG AGAGCCGTGT AAATCTCCAC TCGAGCTACT TCGAGAAAGC AAAACCTCCG TAGAAGAAAT CGTTTCAAAG ATGCTCTCAA TGAAAAAACA AGGAAATCAA AAATCCGAGA TTCGAGAACT CCTCACACAA ATGTTCCTCA ACTTCGTCAA TCTTCGTCAG GCGAATCGTG CGATTTTGAC TGAGGAAGAT AAAGTGAAGG CGGAGACGGA ACGAGCAAAG GCACCAGTTG ATTTCACAAC ATTGCAATTG CATAATCTTA TGTATGAGAA GAGTCATTAC GTTAAAGCTA TTAAGGCTTG TAGAGATTTC AAATCTAAGT ATCCTGATAT TGACCTTGTT CCTGAACAAG ACTTCTTTCG TCATGCTCCT GAAGCTATCA AAGACCAATC GCTTTCAAGT GATAGTTCAC ATGTTTTGAT GCCTAAGAGA CTCAATTTTG AGCTTCATCA GAGGAAAGAA TTGTGTAAGC AACGAGCGAG ATTGGAGCAA CAGAAGAAGA GTTTACTAGA AACTATTGCA GAGCGTAAGA AGTTTTTGTC AAGTCTTCCT CTTCACCTTA AGTCTCTGAA GAAAGCATCG CTTCCAGTAC AGAACCAGTT GGGTATCCAG CACACAAAGA AACTGAAGCA GCATAATCTT GCTGAGCTGC TTCCTCCTCC GCTTTATGTA ATTTACTCAC AGCTCTTGGC ACAAAAGGAA GCTTTTGAGG AGAGTATCGA ATTGGAGGTA GTTGGGAGTC TTAAGGATGC TCAAGCTTAT GCTAGACAAC AATCGAAAAA GGACTCGGGT ATGTTGAATA ATACAGAAAG TTCTAGGTTG GAGGATGATG GACCTGATGA CGATGATGAT GGACAAAGGA GAAGAAAACG ACCCAAGAAA CTTACTAGCA AAGAAGGTTC TGACAAGGCA GGATTATATC AAGTCCACCC TCTCAAAATT GTCCTTCACA TATATGATGA TGAGATACCT GATACAAAAT CCCTCAAACT TGTCATTCTC AAGTTTGAGT ACGTGCTGAA GTTGAATGTT GTATGTGTTG GCGCTGAAGG CTCTCAGGAT GGACCAGAGA AAAACATCTT TTGTAACTTA TTTCCAGACG ACGCTGGACT TGAGCCTCCT CATCAGTCAA CCAAGCTCAT CCTTGGTGAT GGTCAGGCAT TTGATGAGAA CAGAACTTCA AGGCCTTACA AATGGGTGCA ACATTTGGCG GGAATTGATA TTTTACCGAT TTTATTAGGC CAAGAAGCTC ATAACACTGA CTCAGCTAAA AGTGATACGT TTGTGCCTGA TCTTTCATTG TATCGCCAGC AGCATAGAGT GCAAACAGTT CTGCAAAGAA TACGCTCGCG GAAAAAAGCG CATCTGGCCC TTGCGGAACA GCTTGATTTG CTTATGAAAC ATGAGTTACC AGTGGTGAAC TGCGAAGACG CTCCTTGGGC ACTGCATAAT GTTCTCTGTG CTTTGGATTC CTGGTTACAT ATACGATCTT CAGCTAGTAA GTCATGCTCT CTGACTCTAA ACAGTGTGGA ACAAGTTCCA GAACCTATGG AAATCGATGT AGATGGGAGA TCTGTTTCTG GAAAGGAAGA TCTTGAAACT ATACGGGAAG ATGGAGAACT TCCCTCTTTG GTCACAGCGG CTGCTTCGTT AACCAGTTCC AATCATACCC CATCGAAAGT ATCTAATCAA GCACGGTCAA GGCAGTTGGC CTTGATGACA AAGAACCTAG ATTCTCCAAT TAGCAAAGGA AAGTCACCAA GTTTCAAGAA ATACGAAGAT GATTTGGATC TTGTTTTGGA TGATAGTGAA GTAGATGAGC CAGCAACTGA GGCACATGTA GAAGCGTTGT GCCCTGAGAA AGCTGATAAT TCATGGGTGG ATTATGGTGC GAGAGAGTTT GCACTTGTGC TCTCCAGGAA AATAGATGGC GGAAAATTGT GGAAGTTAGA AGCAACGGTT CGTGTTAGCA TGGAGTATCC TCTTCGACCT CCTTTGTTTT CTCTGTCTCT CCATGCTTCT TCTTCGCCAG GAAATGACAA TGGGACAAAT GAAAGTGACC ATTACAATGA ACTTCGAGCA ATGGAAGCAG AAGTGAACCT TCATATGTTG AAGATTATTC CTTCAGATCA AGAAAACTAT CTCCTATCTC ATCAGATCAG ATGCTTAGCA ATGTTGTTCG ACTATTACGT GGACGACCCA TCTCCAGATT CCAAAAGAGG AACAGCCACA ACTGTGGTTG ATGTCGGTTT GTGCAAGCCT GTAGACGGTA AGCTTCTTGT GAGATCATTC AGAGGCAGAG ATCACCGGAA AATGATCTCA TGGAAGGGCA GAGGATGTGC ATCGGGTTAT CCATGCTAGG AGATTACATC ACCGCCACTC ATTTCTCTAT ATTATCTTTC CCTGTTGGTA CAAGCAAAGG TTTTTGCATG GAACATTTTT TCTTAGTCGT ATAAACCGTT ATTGAAACAG CCTTCTTGTT GAGTGAGGAC CTGGTCTGTT TT |
| Length | 2592 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 5019630.. 5023101 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G42920.2 |
| Description | THO complex, subunit 5 |
| TAIR curator summary | Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. |
| Alias | [AtTHO5][THO5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 5.74456 |
Ahg488797 | GPI transamidase component family protein / Gaa1-like family protein |
| 6.48074 |
Ahg473368 | Formin Homology 14 |
| 10.9545 |
Ahg928581 | |
| 14.3875 |
Ahg892422 | FKBP-like peptidyl-prolyl cis-trans isomerase family protein |
| 17.4642 |
Ahg938338 | Transducin/WD40 repeat-like superfamily protein |
| 22.5832 |
Ahg487477 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 27.7489 |
Ahg479309 | modifier of snc1,4 |
| 30.9839 |
Ahg936878 | Transducin family protein / WD-40 repeat family protein |
| 31.1769 |
Ahg941643 | TCP-1/cpn60 chaperonin family protein |
| 37.9473 |
Ahg323324 | RNA helicase, ATP-dependent, SK12/DOB1 protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
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