Detail



ID : Ahg495646

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|495646|fgenesh2_kg.8__1462__AT5G55590.1
Sequence
ATGAAAGTCG AAGCTTTTAT TCCCGCCGTT TTATTGCTCT GTTTTGGATG TTTAAAAAGC TCGTGTGCGT TGCAGATAGG TAATAATGAT TTGAAGAATT ACATAAGCTG GGAAGATCTG AGAGTTGTGG AAGATGGAAG AACAGAGAGA AGTTTTAGTA TTAAGGAGAA TAGTAATTGG GTAACCACAA ATGCAAACTC AAAAGCAAAC GCGAACGCTA CAAACGTGAG CAGAGTGATT GTGGTTGATA AAAACGGAGG AGGAGACTCT GTTACAGTTC AAGGAGCTGT TGATATGGTT CCTGATTCCA ATTCACAGAG AGTTAAAATC TTCATTCTTC CTGGGATTTA CAGGGAGAAG GTGATTGTGC CGAAATCAAA ACCGTATATT TCGTTCATAG GTAATGAGAG TTATGCAGGA GATACAGTGA TTAGTTGGAG CGACAAAGCT TCAGACCTCG ATAGCGATGG TAGAGAACTC GGTACTTATA GAACCGCCTC TGTTTCCATT GAATCTGATT TCTTCTGTGC TACTGCCATC ACTTTTGAGA ACACGGTGGT GGCAGAGGCG GGAGAACAAG GGAAGCAAGC GGTGGCGTTG AGGATTATTG GGGACAAAGC TGTGTTCTAT AGAGTTAGGG TTTTGGGATC ACAAGACACT CTTTTTGATG ACAATGGATC TCACTACTTT TACCAATGCT ATATCCAAGG AAATGTAGAT TTCATCTTTG GCAACGCCAA ATCACTTTAC CAGGCAAAAC CCGACTGTGA TATCCACTCA ACCGCAAAGA GATATGGCGC GATCGCGGCT CATCATAGAG ACTCGGAGAC TGAAGATACC GGGTTCTCGT TTGTGAACTG TGATATCAAT GGTACTGGGC AGATTTACCT GGGAAGAGCT TGGGGAAACT ACTCGAGAAC TGTTTATTCA AACTGTTTCA TAGCTGATAT TATCACTCCT GTGGGCTGGA GTGACTGGAA AGATCCTGAG AGGCAAAGCA AGGTGATGTT TGGGGAGTAC AATTGCAGGG GAAGAGGAGC AGAGAGAGGA GGCAGAGTAC CGTGGTCGAA AACTCTTACC AGAGATGAAG TGAAGCCTTT TCTGGGCAGA GAGTTCATAT ATGGAGATCA ATGGCTGAGA CTCTAATTCT ATTTTTAACC GGACGGACAT AAAGGTCCAG CTAGCTAACA GGAGATGATG ATCTAATTAT ACTCTATACA TTTGTAATTA GTTTGAATCT GAGTAGAGAG AAATAGAATC TGCATGAAAG TAAATGAAAC CCAGGTTTTG GTTTTAGAT 
Length1299
Protein Sequence
Protein Residue
Map Locationscaffold_8: 16073246.. 16075171
Download Sequence
A.thaliana
AGI-codeAT5G55590.1
DescriptionPectin lyase-like superfamily protein
TAIR curator summaryEncodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.
Alias[QRT1][QUARTET 1]
Gene coexpression
MR
MR Locus Description
8.544 Ahg493853 Exostosin family protein
25.4558 Ahg904679
40.398 Ahg352174 Protein phosphatase 2C family protein
42.1426 Ahg312489 Polyketide cyclase/dehydrase and lipid transport superfamily protein
54.7723 Ahg916020
63.7809 Ahg486927 cation exchanger 4
67.4907 Ahg933779 Domain of unknown function (DUF313)
67.7495 Ahg947836
72.5396 Ahg315689
81.3757 Ahg945462
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression