| Annotation |
|---|
| Description | jgi|Araly1|496698|fgenesh2_kg.8__2514__AT5G64813.1 |
| Sequence |
AAACGAAGTC GTTTCATATT TACGCTCTTC CGCCCCAAAT CTGAAACACT CGTAAGTAAA TTCGAAGGAA TTTTGGATCT CTCTGATCTC GATCCAGATT CTCTCTACTT TGCTTATCTT CCAGAGAGAA ATTTGCATCT TCAGATTTAT TCGAGGAGGA AGACGAACCC TAATTGATTG ATTTCGGTGG AGGAGAGATC TTTCTAAAGA AGTTTGATTC TGATCTGAAA TCATAGGTTT CAGCCGTAGA TCTGCTGCTT CTTTCGATCG ATTCGGGAAA TCTGTAGTAT TGATTCCATA GAATTTTCGT TAGTCTTGGT GTTCTGTTAC TTCGGTAATG TTAGATCGTA AAAGTCTTCC GTTGTGAGGA ATCGGAAGTT GCTATGAGTG TTTGTGGAAG CTGATTCTTC TCGTTTTGGA TTGAATCAGT GTTGGTTTTC TTATTTGTTA CCTAATCTGA ATGAAGTTTT GGAGGGAACG TGAAAGGGAC AATAAGGAGC ACATCTTAGC TCCATTATGT GGGCAAGTTC GAGTATTGGT TGTTGGTGAC TCAGGTGTTG GAAAAACATC ACTTGTACAC CTCATCAACA AAGGTTCTTC TATTGTTCGC CCACCTCAAA CTATTGGATG CACAGTTGGT GTCAAGCACA TAACCTACGG GAGTCCAGCT AGTTCTTCAA GTAGCATTCA AGGTGACTCA GAGAGAGATT TCTTTGTTGA ACTCTGGGAT GTGTCTGGGC ATGAGAGATA CAAAGATTGT CGGTCACTGT TCTATTCACA AATCAATGGC GTTATTTTTG TTCACGATCT ATCTCAAAGA AGAACAAAAA CAAGCTTGCA GAGATGGGCG TCTGAGGTTG CAGCGACTGG GACTTTTTCA GCTCCTCTTC CCTCGGGTGG TCCTGGTGGT CTTCCTGTTC CATACATTGT AGTTGGCAAC AAAGCAGATA TTGCTGCAAA AGAAGGAACA AAAGGAAGCA GTGGAAATCT TGTTGATGCA GCTCGTCATT GGGTTGAGAA GCAAGGTTTG CTTCCTTCTT CAAGTGAGGA TCTTCCTCTC TTTGAAAGCT TTCCTGGTAA TGGCGGTCTC ATAGCGGCTG CCAAAGAAAC CAGATACGAT AAGGAAGCTT TGAACAAATT TTTCCGGATG TTGATAAGAA GAAGATATTT CTCAGATGAA CTGCCAGCAG CCTCACCATG GTCTGTTTCG TCCATTCCAA CCTCATCATC CCAACGGTTA GACGAGATCA CAAGTGATGA TGATCAATTT TACAAGCGAA CAAGTTTACA TGGAGAACCA TACAAGTACA ACAACACATT ACTGCCACTT CCAGCACAAC GCAACCTAAC TCCGCCTCCC ACGCTCTATC CGCAACAACC TGTGTCTACC CCTGATAACT ACGCCATCCC GAGATACTCT CTTTCCAGTG TACAAGAATC AACCAACAAT GGCAGTGCCA GAGCTAAGCG AATGGATATA AACGTCTGAA GTCTCTCATC TCTTGTTTGC TCTTCTCATT CCAAGAAAAC TTCATGTTAT TGCTTTTGGA TCTCTATTAT TCTTTTTGAT TCTTCTTTGT AGGTTGGTAA AGTGAATATG TGTGTAAACC CTCTTTGGTT TGTACATTGT GGGGTTTTGA TCTTATAGCA AATTCTTTGA ATGTTTTTTT TTTTTTGGTT ATCATATGTA TTACACAGTG AACGGTTACA AAATCACAAT AATGTTTGTT ATTTTTTTAC AATCTAAGCA TATCAGTTTG T |
| Length | 1761 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 20360571.. 20363194 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G64813.1 |
| Description | Ras-related small GTP-binding family protein |
| TAIR curator summary | The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis. |
| Alias | [LIP1][Light Insensitive Period1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 9.05539 |
Ahg479664 | DNA binding |
| 12.49 |
Ahg939897 | aminophospholipid ATPase 1 |
| 12.8452 |
Ahg919313 | Basic-leucine zipper (bZIP) transcription factor family protein |
| 13.4164 |
Ahg950867 | U5 small nuclear ribonucleoprotein helicase |
| 13.4907 |
Ahg949543 | quinolinate synthase |
| 14.2478 |
Ahg475671 | Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 |
| 17.4356 |
Ahg895406 | protein kinase family protein |
| 17.9444 |
Ahg941387 | Protein kinase superfamily protein |
| 23.8328 |
Ahg487906 | Peptidyl-tRNA hydrolase II (PTH2) family protein |
| 24.2899 |
Ahg889083 | diacylglycerol kinase 7 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|