| Annotation |
|---|
| Description | jgi|Araly1|888512|Al_scaffold_0007_498 |
| Sequence |
ATGAAAGATA ACCAAACGGA AGTTGAATCG AGGAGCACTG ATGATAGATT GAAAGTTAGA GGTAATAAAG GTGGAAAGAA AACAAAGGAT CCAAACAAGC CTAAGAAACC TCCAAGTCCT TTCTTCGTCT TCCTGGACGA TTTCCGAAGG GAGTTTAATC TAGCTAACCC TGACAACAAA TCCGTCGCTA GTGTTGGTAA AGCTGCCGGA AAGAAATGGA AATCGATGAC TGAAGAAGAT AAAGCACCTT TTGTAGCAAA AGCAAAGAGC AAAAAGACTG AGTATGCTGC GACTATGCAA CAGTATAACA TGGAACTGGC TAATGGAACC AAGACAACTG GAGATGATGA GAAACAAGAG GAGAAAGCTG ATGATTAG |
| Length | 378 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 2123019.. 2123903 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G35570.1 |
| Description | high mobility group B5 |
| TAIR curator summary | Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Cannot be phosphorylated by CK2alpha. |
| Alias | [HMGB5][HMGD][NFD05][NFD5][high mobility group B5][NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 10.583 |
Ahg476336 | transcription factor IIIA |
| 12.4097 |
Ahg481034 | cold, circadian rhythm, and rna binding 2 |
| 15.8745 |
Ahg889195 | Ribosomal protein S30 family protein |
| 20.4206 |
Ahg482064 | 16:0delta9 desaturase 2 |
| 23.3666 |
Ahg495739 | TCP-1/cpn60 chaperonin family protein |
| 24.4949 |
Ahg475919 | flavin-binding, kelch repeat, f box 1 |
| 26.3818 |
Ahg495674 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| 27.8388 |
Ahg486143 | nucleolar essential protein-related |
| 33.0454 |
Ahg928106 | Heavy metal transport/detoxification superfamily protein |
| 34.4093 |
Ahg924622 | non-intrinsic ABC protein 10 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|