Detail


ID : Ahg890189

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|890189|Al_scaffold_0007_2175
Sequence
ATGGAAGCTC GCTATTATGC ATACCCTGCA ATAGAAGATG AGAAATCACA GCAAGACGAA TCGTTCAAGA AGATCCTCAA CGAGTCCTTA ACGTTCCATT TCTGGAACAG CATAACTTCC TCACTGATCC CTGAATCTGA GAGCCTTGTG GCTAGATTGA TCTCTTCCGA TCACGAATCC AGTGATGTGT CTCCTCCTTC TTCTTCTCCA TCATCGCCAC CTTCTCAATC TCTCGTGAAA TCAGTCTGTT CATTGGTCTA TAACTCCTAT CTTCGTCAAA ACCATGTCAT ACAATCCCCA CACCGTGTCA ATCTCGACTT CGATGCTAAT TCTCTTACCC ACGAGCAAGC GATTACTGTG GTGGCTTCAC TCGCGAGCGA ATCTGGTTCG ATGGTTGCTC TTTGTTTCTT CTATTGGGCA GTGGGTTTCG AAAAGTTCCG ACATTTCATG AGATTGTATC TCGTAACTGC TGATTCTTTG ATTGCTAATG GAAATTTGCA GAAAGCTCAC GAGGTAATGC GATGTATGCT TAGAAATTTC TCGGAGATTG GGAGATTAAA CGAGGCTGTT GGTATGGTTA TGGATATGCA GAATCAGGGA TTATCACCTA GCTCGATAAC TATGAATTGT GTTCTTGAGA TTGCGATTGA GTCAGGTTTG ATTGATTATG CAGAGAATGT GTTCGACGAA ATGTCTGTGA GAGGAGTTTG TCCGGATTCT AGTTCTTTTA AGCTTATGGT TATTGGTTGT TTTAGAGATG GTAAGATTCA GGAAGCTGAT AGATGGTTAA GCGGAATGAT TCAAAGAGGA TTTATTCCTG ATAACGCTAC ATGTACCTTG ATTCTTAGTG CATTGTGTGA GAATGGTTTA GTAAATAGAG CGATTTGGTA TTTCCGGAAG ATGATTGATT TAGGTTTTAA ACCAAACTTG ATTAATTTTA CGTCTTTGAT TGATGGGTTA TGCAAGAAGG GAAGTATAAA GCAGGCTTTT GAGATGTTAG AAGAAATGGT TAGGAACGGT TGGAAACCAA ATGTGTATAC ACACACGGCT TTGATTGATG GGCTATGTAA AAGAGGATGG ACTGAGAAAG CGTTTAGGTT GTTCCTGAAA CTCGTTCGTA GTGATATTTA CAAACCCAAT GTGCATACCT ATACTTCGAT GATTGGTGGG TATTGCAAAG AGGATAAGCT GAACCGTGCA GAGATGTTGT TTAGTAGAAT GAAAGAGCAG GGTTTGTTTC CTAACGTGAA CACGTATACA ACACTCATTG ATGGTCACTG TAAAGCAGGA AACTTTGATA GAGCGTACGA GTTGATGAAT TTGATGGGTG ATGAAGGTTT TAGGCCGAAT ATTTATACGT ATAATGCGGT TATAGACAGT CTCTGTAAGA AATCAAGGGC ACCTGAGGCA TATGAGTTGC TGAATAAAGC ATTTTCTTGT GGATTAGAAG CAGATGGAGT TACTTACACT ATTCTTATCC AAGAACAGTG TAAGCAAAGT GACATTAAGC AAGCTCTTGC TTTTTTCTGT CGGATGAATA AGAGTGGTTT TGAAGCCGAT ATGCGCCTGA ACAACATACT GATAGCTGCA TTTTGTAGGC AAAAGAAAAT GAAGGAAAGT GAGAGGCTTT TTCAGTTAGT AGTGAGTCTT GGATTGGTTC CAACGAAGGA GACTTATACG TCTATGATAA GCGGGTATTG TAAAGAAGGC GACATTGATC TGGCTTTGAA ATATTTTCAC AACATGAAGA GGCATGGTTG TGTTCCTGAT AGCTTCACTT ATGGTTCACT AATAAGTGGT CTCTGCAAGA AGTCCATGGT AGATGAAGCT TGTAAGCTTT ACGAAACGAT GATTGACAGA GGTTTATCTC CTCCTGAGGT AACTCGAGTC ACATTAGCAT ATGAGTATTG TAAGAGGAAT GATTCAGCCA GCGCAATGAT TGTGCTTGAA CCTCTAGATA AGAAACTATG GATTAGAACT GTTAGGACAC TTGTGAGAAA GTTGTGTAGT GAGAAGAAAG TCGGAGTGGC AGCTCTGTTC TTTCAGAAAT TGTTGGAGAA GGACAGTAGT GCTGATCGGG TTACCTTAGC TGCTTTCACT ACAGCTTGTT CTGAGTCTGG CAAAAACAAT CTTGTTGCTG ATTTGACCGA GAGAATCTCC AGAGGAGTAG GCTAG
Length2175
Protein Sequence
Protein Residue
Map Locationscaffold_7: 9335998.. 9338398
Download Sequence
A.thaliana
AGI-codeAT4G19890.1
DescriptionPentatricopeptide repeat (PPR-like) superfamily protein
TAIR curator summary
Alias
Gene coexpression
MR
MR Locus Description
17.3494 Ahg495232 cleavage and polyadenylation specificity factor 160
46.1086 Ahg486635 Pentatricopeptide repeat (PPR) superfamily protein
51.7011 Ahg322482 Tetratricopeptide repeat (TPR)-like superfamily protein
72.208 Ahg487351 E3 ubiquitin ligase, putative
72.2219 Ahg946306 Pentatricopeptide repeat (PPR-like) superfamily protein
73.3757 Ahg894082
91.0275 Ahg332429 Ubiquitin carboxyl-terminal hydrolase-related protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression