Detail



ID : Ahg892457

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|892457|Al_scaffold_0006_453
Sequence
ATGGCGATTC GGCCGAGAAC TCGTAAAAGG GTTCAAGCAG TTCGTCGTGC TGCTGATGGA AGCGCTTTTA AGAAATGTGA AGAATGTGGT GTTATGATAG CGATTGCTCT GTTTGATATG CATGAGTGCG GTGAGAAGAG AAGGGAAGTG AAGAGATTCA AGTACGTTGC CAGTGGCAAT GTCATTAATA TCTCGAAACC AATTGGGAGC TTTGAAGATG AACCCAGATC ACCATTTGTC TTCTTCTTAG AGGATTTTAG GGAAAAGTAC AATGGAGACT TAGTGGATGC TAGCAGAATA TGTTTCAATG TATGGAAGAA CATGTCACCA GAGGACCAAA AACCATTCAA CGCCCGTGCT ATGGAGGTTG ATTTGGCACA CAGCAGAAAG TTAAACGAAG AAGCTAAAAC TATTGATAAG GCAGATGATG AGGCAGATTC GAAAACTGTT GGGAGATATG ACAAGTTCTA TGAGAGCTAC GTTCATTATG AAGAAGAGGA GGACTATGAT TCATCTGATC ATTTTGGACA TGAGTTTTGG GAAGACGATA CTCTGCTCGA CTACTGA 
Length567
Protein Sequence
Protein Residue
Map Locationscaffold_6: 1863309.. 1864737
Download Sequence
A.thaliana
AGI-codeAT5G05330.1
DescriptionHMG-box (high mobility group) DNA-binding family protein
TAIR curator summaryEncodes a protein with a putative HMG-box domain. The high-mobility group (HMG) proteins are chromatin-associated proteins that act as architectural factors in various nucleoprotein structures, which regulate DNA-dependent processes such as transcription and recombination. Expression of this gene was not detected according to Grasser et al. (J. Mol. Biol. 2006:358, 654-664).
Alias
Gene coexpression
MR
MR Locus Description
35.171 Ahg897581 cytidine/deoxycytidylate deaminase family protein
48.1456 Ahg935081 squamosa promoter binding protein-like 9
68.0735 Ahg357047
84.7113 Ahg489895 other RNA
88.6905 Virus3817
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression