| Annotation |
|---|
| Description | jgi|Araly1|897581|Al_scaffold_0005_1547 |
| Sequence |
ATGGCTCTTT CATTTCGAAT TTGTTCGTCT CCGTTAATCT GCAGAGCCAC TCTCTCAAAC GGCGACAATG GTCGTAACCA CCACGCGATT GATGCCGCTT TTATCCGACG CGCCGCCGAT CTGGCCGAAA TGTCCGCCGG ACTTACTTCA CCGCACCCTA ATTTCGGTTG TGTAATCGCT ACTTCTTCCG GTAAAGTCGC CGGAGAAGGA TATCTATACG CTCAAGGCAC TAAACCGGCG GAAGCGTTGG CTGTTGAAGC TGCCGGAGAG TTTTCTAGAG GCTCCACTGC TTATTTGAAC ATGGAGCCTG GTGATTGTCA TGGTGACCAC ACTGCTGTAT CTGCTCTTGT TCAGGCAGGA ATTGACCGAG TTGTTGTTGG AATAAGGCAT CCTCTGCAAC ATCTTAGAGG CTCTGCGATT CGTGAATTAA GAAGTCAAGG GATCGAAGTT AATGTTCTTG GAGAAGACTT TGAGAGTAAA GTTCTCGAGG ATGCTCGGAA ATCGTGTCTT CTTGTGAATG CTCCTTTGAT TCATAGAGCT TGTTCTCGGG TTCCGTTTTC GGTTCTTAAG TATGCAATGA CTCTTGATGG TAAGATTGCA GCAAGTAGTG GACATGCAGC TTGGATAAGT AGTAAACTCT CTAGAACCCG AGTGTTTGAG TTGCGAGGAG GAAGTGATGC TGTGATAGTT GGAGGAAACA CAGTACGCCA AGATGATCCT CGATTGACTG CAAGACATGG ACAAGGTCAC ACCCCTACTC GAATTGTGAT GACACAGAGT CTTGATCTTC CTGAGAAAGC CAATCTATGG GATGTCGCGG AAGTATCTAC CATTGTTGTT ACCCAAAGGG GTGCAAGAAA GAGTTTCCAG AAATTTCTTG CGTCCAAGGG TGTTGAAGTT GTGGAGTTTG ACATGTTGAA TCCGAGGGAA GTTATGGAAT ATTTCCACCT TCGTGGATAT CTTTCGATAC TATGGGAGTG TGGGGGAACA TTAGCTGCAT CTGCTATATC ATCCAGTGTC ATCCACAAGG TTGTTGCTTT TGTTGCTCCA AAAATTATTG GTGGGAGTAA AGCACCTTCC CCCGTTGGTG ACCTTGGGAT GGTAGAGATG ACACAAGCAT TGAATCTAAT CGATGTTTGC TACGAGCAGG TTGGTCCCGA CATGCTTGTC AGCGGATTTC TTCAGCCCAT ACCAGACCTT TTACCTGTTA TCCCATCAGA GGATGCAACT GTTGAGATTG ACCCCAGTGT TGACCCCTTT GAACCTAGTA TCATCTTCTT CTACAAAACA TGGGACCTTT ATGGAGAGAA TGATGATTAC ATGACCTGGT CTAGTGTGGA ACATTACTAT CAGGCAAACA AGTTTGTTGG GGTCGAAAAT CCGATGGCAC ATGAATGCGT TGAGAAAATT AGAACAGCTA GAAGTCCAGA GGAGGCAGCT CTGATAGGCA GATCAACGCT GAGACAGAAA CCTGAACTGG TTCGGAATGA CTGGGAAGAT GTGAAGATAG AAGTAATGTA TAAGGCTCTA AAATGTAAGT TCTCAACTTA TCCTCATTTG AAATCAATGT TGCTTTCGAC CGTTGGATCT GTTCTCGTGG AGGCTTCACC GCACGATCTA TTCTGGGGAG GTGGTCGTGA AGGAGAAGGG CTTAATTATC TTGGTCGACT ACTTATGCAG CTTCGTTCGG AGTATTTGGA CGAATCCTCT GTTTCAGCTG AAAACACTTC TTCGGCCTGA |
| Length | 1740 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 12528590.. 12530530 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G47390.1 |
| Description | cytidine/deoxycytidylate deaminase family protein |
| TAIR curator summary | Encodes a protein that is believed to function as a pyrimidine reductase involved in riboflavin and FAD biosynthesis. phs1 was identified as a photosensitive mutant that shows reduced growth, chloroplast developmental abnormalities, reduced chlorophyll levels, increased oxidative stress, reduced NADPH/NADP+ ratios, reduced photosystem I electron transport, and reduced photosynthetic protein levels under high light conditions. Many of these abnormal phenotypes likely arise from the reduction in the levels of FAD in the phs1 mutant. |
| Alias | [PHS1][PyrR][PHOTOSENSITIVE 1][pyrimidine reductase] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.24264 |
Ahg496478 | SGNH hydrolase-type esterase superfamily protein |
| 7.54983 |
Ahg947286 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein |
| 15.4919 |
Ahg924637 | DEA(D/H)-box RNA helicase family protein |
| 18.6548 |
Ahg926567 | Methylthiotransferase |
| 28.7402 |
Ahg313692 | acyl-activating enzyme 14 |
| 29.0861 |
Ahg478927 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 35.171 |
Ahg892457 | HMG-box (high mobility group) DNA-binding family protein |
| 36.0278 |
Ahg489258 | Protein of unknown function (DUF819) |
| 38.5357 |
Ahg482091 | ARM repeat superfamily protein |
| 40 |
Ahg493738 | ARM repeat superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
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