| Annotation |
|---|
| Description | jgi|Araly1|893705|Al_scaffold_0006_1701 |
| Sequence |
ATGGCAAGCT CCGGTAAGCC ATCCCAAGAC CAAGTGTTCA TTAACTTCCG GGGAGTGGAA CTGCGGTACA ACTTTGTGAG TCATCTCAAG AAGGGCTTAA AAAGAAATGG AATCAATGCC TTTATAGACA CAGATGAAGA TATGGGCCAA GAATTGAATA TTCTGCTCAA AAGAATCGAA GGTTCGAAGA TAGCTCTAGC GATATTCTCC CCGAGGTACA CAGAGTCAGA CTGGTGTCTG AAGGAGCTGG CTAAAATGAA GGAATGCAGG GAGCAAGGCA AGCTCGTGGT GATTCCAATC TTTTACAAGG TTGAGCCTTC CACTGTTAAA AGACAGAAAG GCGAGTTCGG TGACAATTTC AGGGATCTTG TTGAGTTTAT TGATGAGGAG ACCAAGAACA ACTGGACAGA AGCTTTAAAG TCTATTCCTC TCTTAACGGG TTTCGTGTTA AACGAGAATA GCGACGAGGA CGATCTCATC TTCAAAGTTG TCAAGGAAGT TAAGAAAGCG TTGAATATCA TTTCACGGGC ACCTCCTAAT CGCCTAGAAG GTACTGTTCT TTCCTCGACA GTACACCAGA AAAAACTTGA GAGTTCGTGT GGAGTTGACT TACGTCTAAA GCAACTTGAA GAAAAGTTAA GCTTCGGGTT TGAGGACACA ACTCGTATCA TTGGGGTTGT TGGGATGCCT GGCATTGGTA AAACTACTCT GGTCAAGAAG TTATACGAGA AACTCAAGAA CGAATTCTTG AGCCACGTGT TAATCCTAGA TATCCATGAA ACTTCAAGGG AACAAGGCTT GAGTTACTTG CCCACAATAC TCTTGGAAGA TTTACTCAAA GTCAAGAATC CCATGTTTGA GACCGTCCAG GCTGCTCATG AAGGTTACAA GGATCAACTA CTCAAAACCA AATCACTTGT TATACTCGAC CATGTTAGTA ACAAGGAACA AATTGCTGCT ATACTCGGCA AATGTGATTG GATTAAACAG GGGAGCAAGA TCGTCATTGC AACAGGTGAT ACGTCCCTGA TACATGATTT GGTCGATGAT ATTTACCAAG TCCCTCAATT AAGCTATAAA GACAGTTTAC AACAATTTAC CCATTATGCC ATTGGTGATC AAAGCAATGC TCAGAGTTTC TTGAAGCTGT CGATAGATTT CGTGCATTAC ACCAAAGGAA ATCCACTAGC TCTAAAGGTA TTGGGTGCTG AGCTTCTGGG GAAAGACGAG TCTCTCTGGA ATTCAAAATT GGATTCTCTG AGTCAGCACC ATAAAGGTCG AGCAAGAAGC TCTAGAAAGA TACGAGCACA GAGCTCTAGT GAGATGCTTC AAAGTGTTTG GAAAGAGTGC TATGATGGTC TTAGTCAGCA ACAACAAGAT ACACTTCTTG ACATAGCTTG CTTCAGGTCG CTGGACAAGA ATTATGTAGC AAGTTTATTA GATTCACATG ATGCAAATTC CACTGAAGCT AGGATTGAAA TCGAGAAACT AATGAACAAG TTTCTGATTA CTATATCTGC CGGCAAAATA GAGATGCATG ATACACTACA TATGTTTTGT AAGGAAGTTG GTAGGGAAGC CACAGCTCCA GATGGAAAAG GGCTGCGAAG GTTGTGGGAC TATCATACGA TAATTGATGT GTTAGAGAAC AATAAGGGAG TTTCTGTCAG ATCCATTTTC CTTGATTTGG CTGATCTTAA CATGAATAAT AGCTTACACA GTCAAGCATT TAACTTGATG AGCAATATAC GGTTCCTCAA AATCTACAAC ACTTGTTGTC CTCAAGAATG TGACCGTGAC ATTATGCTGA AATTCCCGGA TGGGCTCGAG CTCCCATTTG ATGAGCTGCG ATGTCTCCAC TGGCTGAAAT TCCCACTGAA AGAAGTTCCA CCAGATTTCG ACCCAAAGAA TCTTGTGGAC CTTAAGCTTC ATTACAGCGA GATTGAACGA GTTTGGGAGG GTAATAAGGA TGCATCGAAA CTTAAATGGA TAGACTTCAA CCACTCAAGA AAGTTGTGTA CCTTGTCAGG ATTAGCCGAG GCTCGAAATC TTCAAGAATT GAACCTTGAA GGCTGCATAG CATTGGCCAC ATTGCCCCAG GATATGGAAA ATATGAAGTG TCTTGTTTTC TTGAACCTCA GAGGCTGCAC AAGTCTCAAG TATCTTCCAG AGATTAACTT GATATCTCTG GAAACTCTCA TCCTCAGCGA CTGTTCAAAA TTTAAGGTAT TTAAGGTGAT TTCAGAAAAG CTAGAAGCAA TATACTTGGA TGGCACTGCG ATAAAGGAAC TTCCTTCTGA CATTCGGAAT CTCCAAAGAC TTGTCTTATT AAACATGAAA GGCTGCAAGA AGCTGAAAAC ACTTCCTGAC AGTCTTGGCG AACTAAAAGC TCTTCAAGAA CTGATACTCT CTGGCTGTTC AAAGCTCAAA AGTTTTCCAG AAGTTGCGAA AAACATGAAC CGTCTAGAGA TTTTACTTCT AGATGAAACA GCTATCAAAG AAATGCCAAA TATATTCTCT CTGCGGTACT TATGCCTAAG TAGAAATGAA AAGATATGCC GCCTCCCAGA GAACATCAGC CAATTTTCTC GACTGAAATG GCTTGATATG AAGTACTGTA AAAGCCTTAC ATATCTTCCT AAGCTTCCAC CAAACCTTCA ATGCTTAGAT GCACATGGAT GTAGCTCACT GAAAAGCATT GTGCAACCAC TTGCACATGT TATGGCGACA GAGCATATTC ATTCCACTTT TATTTTCACG AAGTGCGACA AATTGGAACA AGCTGCAAAG GAGGAAATTT CAAGCTATTC TCAAAGGAAA TGTCAGATAC TACCAAGTGC ACTTAAACTC TGCAATAAGG ATCTTGTTCC TGAGATTTTG TTCAGCACCT GCTTTCCTGG AGGTGAAATA CCTCCATGGT TTTATCACCA AGCAATTGGA TCTAAGGTAA AGTTTGAATC GCCCCAACAT TGGAAGTACA ATAAGCTCTC TGGGATAGCC TTTTGTGCTG TTGTCTCATT CCAAAACTGT CAAGATCAGA CCAGAACAGA ACGAGAGCAT ACCAACTGCT TGTCAGTGAA ATTTACTTGT ACATCAACAA CTGACGCTGA GCCGTGCACC GAAACGACTT GGAAAGTTGG TAGCTGGACT GAACAGGGAA ACAATAAAGA CACGACTGAG TCAGATCACG TCTTCATTGG ATTCACTACC TGCTTACACC TCAGAAAACA TCTTGAAGAC CAGCACTCAA GTCAATGTGC TCCGATTGTA GCAATTTTTG AGTTTAGTGT GTCCAACGAC AACACTAGTG GGGAAGCTAG GTTTGAGGTG TTGAAATCCG GTTTCAGTTT CGTGTTTGAA CCTGATGAGA ACAAAACAAC AATCATTAAC GAAACTCCAA GAACTAACGG TTATCTCGTG GATCAAGCAA ATGGTGTGAC AAATCACAAA ATGTCGAATG GCAGACCAAG TGAAGCTCAT TTTTACACCA CACTTCAGCA GGGATGA |
| Length | 3507 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 7068276.. 7072165 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G17880.1 |
| Description | disease resistance protein (TIR-NBS-LRR class) |
| TAIR curator summary | Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development. csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal). csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae. |
| Alias | [CSA1][constitutive shade-avoidance1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg941306 | |
| 7.34847 |
Ahg946991 | phragmoplast-associated kinesin-related protein 1 |
| 12.49 |
Ahg917653 | type one serine/threonine protein phosphatase 2 |
| 17.1464 |
Ahg918657 | |
| 22.3607 |
Ahg488605 | endoplasmic reticulum-adenine nucleotide transporter 1 |
| 25.8844 |
Ahg493178 | disease resistance protein (TIR-NBS class), putative |
| 26.7021 |
Ahg940223 | F-box family protein |
| 29.1204 |
Ahg898845 | thylakoid lumenal 17.9 kDa protein, chloroplast |
| 33.0454 |
Ahg928493 | Protein kinase superfamily protein |
| 34.5832 |
Ahg487386 | UDP-glucosyl transferase 76C2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|