Detail



ID : Ahg899041

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|899041|Al_scaffold_0005_3007
Sequence
ATGGAGGCAA AGCAATATTT TGAGAACAGA TTGATGTATC TTGCAGCAAA GAAAAAAAAG GGAGAGAATC CATACCCACA CAAGTTTTTA GTTTCCATGT CAATCTCTGA ATTCATTGAA AAGTATACTA CTTTAAGCAA CGGAGACCAT GTTGAAGACG ACCAAGTTTC TCTAGCTGGA CGGATAATGA GCAGGAGATC TTCCTCTAGC AAGCTTTTCT TCTATGATTT ACATAATTGT AGTTCTAGGG TCCAAGTTAC AGTTGATGCA AGTAAGTCAG AATTAGATGA AGCTGAGTTT ACGAGGGTCC ATGCTAATGT TAAGCATGGA GATATTGTCG GTTTCACTGG ATTTCCAGGA AAAACTAAAA GGGGAGAGCT AAGTATCTTC CCACGATCGT TTACTGTGTT GTCTCATTGC CTCCACATGT TGCAAAAGCC TAGTCCTGGT CTTGAGCCTA ACTGGGTTCC AGGAAAGCCT AGAACTCCAG AAACTTATAT TCTTAAAGAT CAGGAAATTC GGTATCGCCA GCGTTACCTT GACTTGATGC TGAACGATGA GGTCTGCCAG ATATTCATGA CCAAAACTAA GATAATCAAA TACATTAGAA GATACCTTGA TGATCTTGAT TTCTTGGAGG TTGAGACACC TATGATGAGT ATGATTGCTG GTGGAGCAGC TGCACGTCGA TTTGCGACCC ATCACAATGA TATGAATATG AAGATGTTCA TGCGTATCAC ACCAGAACTC TATCTTAAGC AGCTTGTTGT TGGCGGTTTT GAGCGTGTTT ACGAGATAGG AAAGCAGTTC AGAAATGAGG GTATTGACTT GACACACAAT CCAGAGTTCA CCACCTGCGA GTTCTATATG GCTTTCGCAG ACTACAATGA CTTGATGGAG ATGTCTGAGA AATTGCTCAG TGGTATGGTG AAGGAATTAA CAGGGGGCTA TAAAATCAAA TACCACGCTA ATGGGTATGA TAAGGAGCCA ATTGAAATCG ACTTCACTCC TCCATTCAGG AGGATTGAGA TGATGGTAGA GTTAGACAAG GTGGCCAACC TTAATATACC AAAAGATTTG GCTAGCTGGG AAGCTAACAA GTATCTGATT GATGCATGTG AGAGGTTTGA TGTCACATGC CCACCTCCTA AAACGACAGC TCGTTTGTTA GAGAAACTTG TTGGACACTT TCTGGAAGTG ACGTGTGTTA ACCCCACTTT CATAATGAAC CAACCCAAGA TTATGAGTCC ATTGGCAAAA TGTCACAGAT CCAACGAGTT CCTGACTGAA CGATTTGAGT TGTTCGTCAA CCAACACGAA CTTTGCAATG CCTACACTGA GTTGAATGAT CCTGTGGAAC AGCGGCAGCG CTTTGCTGAT CAGCTCAAGG ATCGACGATA TGGAGATGAT GAAGCTATGG ATGAGACGTT TTGCACGGCT CTTGAACATG GACTGCCTCC TACAGGTGGT TGGGGTATGG GAATAGACAG GCTTGTTATG TTGCTTACCG ACTCACAGAA CATTAAGGAG GTTCTCCTCT TCCCAACAAT GAAGCCTGGT CTGGACGAGC CAGCTGCGCT GCGACAGGTA GAACCAAATA TATCTATTAT ACATACTCCT TGA 
Length1623
Protein Sequence
Protein Residue
Map Locationscaffold_5: 18919316.. 18921998
Download Sequence
A.thaliana
AGI-codeAT3G11710.1
Descriptionlysyl-tRNA synthetase 1
TAIR curator summary
Alias[ATKRS-1][lysyl-tRNA synthetase 1]
Gene coexpression
MR
MR Locus Description
16.8226 Ahg905233 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
36.5513 Ahg317859 Homeodomain-like superfamily protein
40.0999 Ahg316947 Pectin lyase-like superfamily protein
47.244 Ahg929733 ROTUNDIFOLIA like 20
49.8999 Ahg491864 Protein of unknown function (DUF626)
51.4781 Ahg922901 beta glucosidase 34
54.5894 Ahg892274 SGNH hydrolase-type esterase superfamily protein
55.3173 Ahg921560 FBD, F-box and Leucine Rich Repeat domains containing protein
61.9355 Ahg343326 Protein kinase protein with tetratricopeptide repeat domain
63.2456 Ahg890287 Protein of unknown function (DUF1264)
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression