Detail



ID : Ahg905301

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|905301|Al_scaffold_0003_2429
Sequence
ATGCAAAGCT CAATGACATT GGAGCTACGG CCATCAGCTG ATTCCGGTTC ATCTGACGTC GATGCTGAGA TCAGCGATGG CTTTTCACCG CTCGATAATT CTCACAGAGA CGTCGCTGAT GAAGGTTCGT TGCTGAGAAG AGCAGAGATG TATCAAGAGT ACATGAAACA AGTACCAATC CCGACGAATC GTGGCTCGTT GATTCCGTTC ACGAGTTGGG TTGGTTTAAG CATCTCAATG AAACAGCTTT ATGGTCAGCC TCTACATTAC CTCACGAATG TTCTCTTACA ACGATGGGAT CAATCACGAT TCGGTACTGA TTCTGAAGAA CAGAGTTTGG ATTCAATCTT TCATCCGTCT AAAGCTGAAG CTACCATCTG GCTTGTTGAG GAGATACATC GAATCACTTC CTCTCATCTT CACATTGCTA GTCTCTGGGG ATCTGATCCT ATGTATCACT CTTTCATTGA CCCAATCTTT CCTAAAATTG AAACAAGTTC TTGA 
Length504
Protein Sequence
Protein Residue
Map Locationscaffold_3: 9536836.. 9537451
Download Sequence
A.thaliana
AGI-codeAT3G22680.1
DescriptionRNA-DIRECTED DNA METHYLATION 1
TAIR curator summaryEncodes RNA-DIRECTED DNA METHYLATION 1 (RDM1), forming a complex with DMS3 (AT3G49250) and DRD1 (AT2G16390). This complex is termed DDR. The DDR complex is required for polymerase V transcripts and RNA-directed DNA methylation.
Alias[RDM1][RNA-DIRECTED DNA METHYLATION 1]
Gene coexpression
MR
MR Locus Description
43.5775 Ahg941442 RING/U-box superfamily protein
45.3431 Ahg476888 AMP-dependent synthetase and ligase family protein
60.5475 Ahg928711 tubulin folding cofactor B
75.4188 Ahg939388 zinc finger (C3HC4-type RING finger) family protein
77.5758 Ahg496696 CLAVATA3/ESR-RELATED 21
85.3815 Ahg483796 Plant protein 1589 of unknown function
89.4874 Ahg493879 Protein of unknown function (DUF 3339)
92.5419 Ahg901754 ENTH/VHS/GAT family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression