| Annotation |
|---|
| Description | jgi|Araly1|908083|Al_scaffold_0002_1164 |
| Sequence |
ATGGCGCCTG AAGTTCAGTT TCCTTGCGAC GGAGACGGCG TATGTATGCG GTGCAAGGTG AAACCTCCGT CAGAAGAGAC ACTCACGTGT GGCACGTGCG TCACTCCCTG GCACGTGTCC TGTCTCCTTC CTGAATCACT CTCTTCTTCC ACTGGAGAGT GGCAGTGTCC CGATTGCTCC GGCGATGTCG TTTCCTCCGC CGTTCCAGTT ACCAGAAACG TCGGACTTGA ATCATCCGGT TCAGTTCTCG TAGCAGCGAT CCGTGCGATT CAGGCTGATC TGACTTTGAC GGAAGCTGAG AAAGCCAAAA GGAGGCAGGA GCTCATGAGT GGTGGTGGTG ACGATCGTCT CGATGAAGAA GACAAGAAGA AGTTAGAAAT CTTTTGTTCT ATTTGCATTC AATTGCCAGA AAGACCTATC ACGACACCGT GTGGGCACAA CTTCTGCTTG AGATGTTTCG AGAAATGGGT AGGTCAAGGG AAGCTAACTT GTATGACATG CCGAACCAAA ATTCCCAAAA ATGTTGCGCG AAATCCTCGC ATCAACTTAG CTCTAGTCTC TGCTATTCGT TTAGCAAGTG TTACCAAATG TTCTGTTGAG GCAGCTGCGG CCAAGGTTCA TCATATTATC CGCAACCAAG ACCGTCCTGA GAAAGCCTTT ACTACCGAGC GGGCTAAAAA GACTGGGAAA GCTAATGCTG CTAGTGGAAG GATTTATGTC ACAATACCTG GTGATCATTT TGGTCCCATA CCAGCTGAAA ATGATCCCAC TAGAAACCAA GGTGTTTTGG TTGGAGAATC TTGGGAGGAC AGGCAAGATT GTAGGCAGTG GGGAGCTCAT TTCCCGCATA TTGCTGGCAT TGCTGGGCAA TCAGCGGTTG GAGCTCAGTC TGTGGCGCTC TCTGGAGGTT ATGATGATGA TGAGGATCAT GGTGAATGGT TTCTCTACAC AGGAAGTGGT GGAAGGGATC TCGGAGGAAA CAAAAGAACT AACAAGATAC AGTCTTCTGA CCAGTCGTTT GCAAAAATGA ATGAAGCTCT AAGACTTAGT TGCAAAATGG GCTATCCTGT CCGAGTTGTC AGGTCTCACA AGGAGAAGCG TTCTGCATAT GCCCCTAAGG AAGGAGTGAG ATACGATGGG GTCTACCGAA TCGAGAAGTG CTGGAGCAAC GTTGGAATAC AGGGTTCTTA TAAGGTCTGT CGTTACCTAT TTGTTAGATG TGACAATGAG CCAGCTCCAT GGACCAGTGA TGAGCATGGC GATCGTCCAA GACCTTTGCC TAATATTCCA GAGCTTAAGA AAGCTACTGA CCTGTTTGTG AGAAAGGATA GTCCGTCATG GGATTTCGAT GAAGCTGAGG GTCGTTGGAA ATGGATGAAG TCTCCACCTG TTAGCAGAAA GGCTGTTGCT GCTTTGGATC CTGAGGAGAG GAAGATCATT AGGAAAGCAA AAAACGGAAA TAACAGACTT CTGAAAGAAT TCGGTTGCCA AATCTGTAAG AAAGTGCTGA GTTTTCCAGT GACGACGCCT TGTGCTCACA ACTTCTGCAA AGCATGCCTG GAAGCTAAAT TTGCTGGGGT CTCTCAAGTG AGAGAGAGAA GCAGAGGCGG GCGCACACTA CGTGCAAAGA AGAACATAAT GACCTGTCCG TGCTGCACTA CCGACCTCTC CGACTTTCTT CAAAACCCGC AGGTGAATAG AGAAATGATG GAAGTTATCG AAAATCTGAA GAAGAAAGAG GAAGAGGCTG AATCAAGCAA AGACACTGCA GATGTGTCTG AAGTTGAACC ACCAACGAAG AGGATCAAAT TGGTTGATAC AGTTGCAGCA GAAGCCAGTG ACTGTGTTGG AAAGTAA |
| Length | 1857 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 9980766.. 9983697 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G39550.1 |
| Description | Zinc finger (C3HC4-type RING finger) family protein |
| TAIR curator summary | Encodes the VIM3/ORTH1 protein that is similar to VIM1. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. This protein functions as an E3 ubiquitin ligase in vitro with members of the UBC8 family E2s. Either of the two RING domains present in the protein can promote ubiquitylation in vitro, but, not the PHD domain. Over-expression of ORTH1/VIM3 leads to decreased levels of FWA methylation, increased levels of FWA transcripts, and delayed flowering. Cen180 repeats are also hypomethylated in plants overexpressing this protein. |
| Alias | [ORTH1][VIM3][ORTHRUS 1][VARIANT IN METHYLATION 3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 10.2956 |
Ahg946316 | Pentatricopeptide repeat (PPR) superfamily protein |
| 21.9089 |
Ahg478343 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 33.1059 |
Ahg331330 | methyltransferase 1 |
| 34.322 |
Ahg944901 | SET domain group 4 |
| 45.5192 |
Ahg324343 | |
| 47.4974 |
Ahg477343 | TPX2 (targeting protein for Xklp2) protein family |
| 49.5681 |
Ahg486880 | Leucine-rich receptor-like protein kinase family protein |
| 64.5291 |
Ahg489063 | DNA polymerase epsilon subunit B2 |
| 68.2935 |
Ahg335111 | ATP binding microtubule motor family protein |
| 73.0753 |
Ahg490375 | Minichromosome maintenance (MCM2/3/5) family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|