| Annotation |
|---|
| Description | jgi|Araly1|916244|Al_scaffold_0008_995 |
| Sequence |
ATGGCTGACA GAGACGAAGC TACTAAAAGA GCCCAAGAAA AAGCTTTTGA ATGCATTTTG AGTCTCGAAG AAGATTTTGC AAAGGCTAGA ATATTATTAA CTGCGCTGTT TTCATCTTTC TCTTTTGGAT TTTGGAGTGA AATAATTGCA ATAAGGTCTG AGCGGGATAA GTTGGCGATG GGGGCATATT TTGCTACGGA AAAACTAGAG GGCGTCATGA AAGAATCTGA ATGCAAGAGA GAAGAAATGA ACGGCGTTTT GGCAAGAAAC ATAGAGTCTT CACAGCTAAT CATTGACCAC CAGAGGAAAT TAAGTGAGAA TTCCGAGTCT CTGCACGCAG CGGAAGAGAT CTCCAGAAAA TTATCTATGG AGGCTACCTT GGATACTGTA CAAAGTACAG AGGAAGTTCG TGAGGAAGCA AGAGCTGCCG AGAGAAGGAA ACAAGAGGAG CATATCAAGC AACTTGAGAG AGAAGGGCTG AAGCTAAAAA GAATTGCAAG AAGAAAGGAG CAATGCACGG ACTATTACTT TGGACCGCAA TCAAACTTTG AACAATGCTG TAATGCCTTG AAGGCTGTCT CAGTCGAAGA GAAGAGTCCA AGGCTTCTGT CGCTGAGCTT TCCCTGGTCG ACATTTCTTA GATTGCCATT TTTCTGGTGT TGCTTTTGCG AAGCTCTAGA TATGGACAGC GGTGGAATTG CTCTCTTTGA GATAATGAGG TGGTCTGCTA ATCTTTTTTT GGCTGTGGAA GAAATTGAAA AATTGAGGGG AGAAGTAGAA TCTAGCAAAA GCCACATGCT CCAGCTTGAG AGTGCCTTAA ATATGGCAGA ATCTACCTGG GGATCACTTA ATGGTGAGCG TACCAGTACA AGCGCCTCAA TATTGACCGA GGATGAAATC AAATCTCTTC AGTTTCAAGG TTTCGATGAC ATCAAGTTGC TTATGTCTCG GTGGATTTCT AAGAATCCAC CCCCAGCTAA TATTTTGGGC ATATGCAATC CGATATACTT ACCTCCACCT CAGAGTGGAT ACAATCTTTT TCGGCCGTAT TCATATTCTT CTCCTCAACA AGACGCCATC CAGCTTAATT CTGGCAGCAA ATCTGTTGCT GAACTAGCTC CTTTGTTTCT TTTTCTTCTC CAGAATCAGG GGCGCTTGAA GAGGATACGT ACGGTGAATT TGGTAAATCT GCCAGCTGGT TTTGCTTATT ATGCAAATAT TTTGGTGGCC AAGGCTTTAA CAGTTTCTCC AGACATCTCT CTAGTCGGAA ACATGCACTT AAGGAGAACG AAGACCTTAA AACAAAAACT TGAGAAGTGT GAAGCAGAAA TTGAGAAAAC TAGGAAAACA GATGAGCTAA ATCTTGATAC CTTTCAGCAA TTTCACAAGC TGGCCAAAAT TTATGAGAAG TATCATGAGG CTGTTGATGC CTTGAGGCAT GAGCAATTAG GTAGAAAGGA AGCTGAGATG ATACTTCAAC GGGTTGTATC CATTCGGATT TATTACTACT AG |
| Length | 1512 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 10310457.. 10315768 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G79280.2 |
| Description | nuclear pore anchor |
| TAIR curator summary | Encodes a 237-kDA protein with similarity to vertebrate Tpr, a long coiled-coil proteins of nuclear pore inner basket filaments. It is localized to the inner surface of the nuclear envelope and is a component of the nuclear pore-associated steps of sumoylation and mRNA export in plants. Mutations affect flowering time regulation and other developmental processes. Probably acts in the same pathway as ESD4 in affecting flowering time, vegetative and inflorescence development. |
| Alias | [AtTPR][NUA][TRANSLOCATED PROMOTER REGION][nuclear pore anchor] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.82843 |
Ahg939118 | ARM repeat superfamily protein |
| 9.64365 |
Ahg330119 | zinc ion binding |
| 20.7846 |
Ahg497488 | eukaryotic translation initiation factor 2 |
| 23.1084 |
Ahg359673 | BRCT domain-containing DNA repair protein |
| 25.2587 |
Ahg945197 | RING/U-box superfamily protein |
| 33.7639 |
Ahg495319 | SCARECROW-like 8 |
| 42.4735 |
Ahg477045 | |
| 44.6318 |
Ahg482666 | glucan synthase-like 8 |
| 47.8121 |
Ahg927133 | transcription coactivators |
| 55.6866 |
Ahg495573 | DEA(D/H)-box RNA helicase family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|