| Annotation |
|---|
| Description | jgi|Araly1|939118|scaffold_503309.1 |
| Sequence |
TTGAATCCCT TTCTCTTTCC AGTAATGGCA TCTAGAGCAG AGGAGAGATC GCCGGCGAAG ATCAAAATCG AAACGGCGGT TAAAATGGAA GAGGAAGAAG ACGACGAGCA TGATTCTAAG GAGAGAGTTC TACAGAGGTA CTTTTTACAA GAATGGAAGC TCGTTAAATC CCTTCTCGAT GATATCGTTT CAAATGGCCG TGTCGTTGAT CCTACTTCTG TTCATAAGAT CCGATCCATT ATGGATAAAT ACCAGGAGCA AGGTCAACTA GTGGAACCTT ACTTAGAGAG TATAGTTTCT CCATTAATGT TTATCATCCG CTCCAAAACA GTTGATTTAG AAGCCAGACC TGATGAAATT CTTGAGATTA TTAAGCCAAT TAGCATCATT ATCTATGCTT TAGTTACCGT ATGTGGGTAC AAAGCTGTTA TCAAGTTCTT TCCGCATCAA GTATCCGATC TGGAACTCGC TGTGTTGCTC CTGGAGAAGT GCCATAGTAC AAATTCTGTT TCTGCCTTGA GGCAAGAAAG CACTGGAGAA ATGGAAGCCA AATGTGTTAC TCTTTTGTGG CTTTCCATCC TTGTGTTGGT TCCGTTTGAT ATTTCTTCTG TTGATACAAG CATTGCTGAT GACAAGACCT TTGGTGTGGA CGACCTTGCT CCTTTGGTAT TGAAGATATT AGGTTTCTGT AAGGACTATC TATGCAGTGC TGGACCAATG CGCAGGATAT CTGGATTGCT TCTATCGAAG CTTTTAACCC GTCCGGATAT GGGAAAAGCT TTTTCAAGCT TTTTTGAGTG GACACATGAA GTTTTATCAT CTAAGGAAGA TAGTGTCACA AACCACTTTC GCTTGCTTGG TGTAATGGAA GCTCTGTCTG CCATTTTTAA GACTGCTAGC CGGAAAGTGT TGCTAGATGT GCTTCCTATT GTTTTGAATG ATGTGACCGT GCTAAGCAAA TCAAATGCGG CGGCTAAAAG TTCTCTGCTT CGCAAGTATT TGATCAAGTT AACTCAGAGG ATAGGGCTTG TTTGTCTTCC TCATCGCTCA CCTTCCTGGC GCTATGTGGC TCAAACTGTC TCTCTTTCTG AGAATATGTC TACGAGTTCA GCCCAAAGAT TGCCGCCTGA TCATACTGTG ACTGCCATCT TACAACCAGA AAGTTTGGAT GATCAAGAGG ATGAAGATAT GGATGTTCCA GAAATCTTAG AAGAGATTAT TGAAATGCTA CTCGCGGGTT TGAGGGACAC GGACACCGTG GTCCGTTGGT CTGCTGCGAA GGGTATAGGT CGTGTAACTT CACGTCTAAC ATCTGTTCTG TCTGAAGAGG TGTTGTCATC TGTATTGGAG CTGTTTTCAC CAGGAGAGGG AGATGGCTCA TGGCATGGGG GTTGTTTGGC CTTAGCTGAA CTGGCTCGTA GAGGGGTACT TTTGCCTAGA AGTTTTCCAC CAGTCGTTCC AGTTATTGTG AAGGCACTCC ATTATGATGT TCGCCGTGGT CCACACAGTG TTGGATCTCA TGTGCGTGAT GCAGCTGCCT ATGTTTGTTG GGCATTTGGA CGTGCCTATT CCCACAAAGA TATGAAAAAC GTGCTGGATC AGCTTGCTCC AGATTTATTG ATAGTAGGTT CCTTTGATAG AGAGGTGAAC TGTAGAAGGG CTGCTGCCGC TGCTTTCCAA GAGAATGTTG GAAGACAAGG AAATTACCCT CATGGGATTG ACATAGTGAA CATAGCTGAT TATTTTTCCC TTTCTTCTCG GGTGAACTCT TACCTTCAGG TTGCTGTTTC CATTGCTCAA TATGAAGGGT ATCTACATCC TTTTGTGGAT GAATTGCTAT ACAACAAGAT CTGCCACTGG GATAAAAGCT TGAGAGAACT TGCTGCAGAA GCTCTTGCTG CTCTTGTTAA GTACGAGCCT AAGCACTTTG CCAACTATGT GCTGGAGAAA CTAATTCCTT GTACCCTTTC AACTGATTTG TGCATGCGCC ATGGTGCAAC ATTGGCAGCT GGAGAGGTTG TGTTAGCTCT GCACCAGTGT GGCTATGTCC TTTCTGCTGA TAGCCAAAAG AGTATGGCTG GGATTGTTCC ATCCATTGAG AAAGCACGCC TTTACCGTGG AAAAGGTGGA GAAATAATGC GACTGGCTGT CTCACGGTTT ATCGAGTGTA TCTCGCTATC TCATGTGACA TTAGCTGAAA GAACAGAACG GATCTTGCTT GATACTCTCA CTGAGAATTT AAGACATCCC AATTCTCAAA TACAGAATGC TGCTGTCAGT GCTGTTAAAC AGCTTGTGCA ATCCTATCTC GTTGGCAATG ATAAGAAATC TGTTGATTTA ATATCAAAAC ACCTAAAACA TCTAACGGAC CCAAATGTAG CTGTCCGAAG AGGTTCTGCA CTTGCACTAG GTGTCTTGCC ATATGAACTA TTGACTGCAA AATGGAAGGA TATAGTTTTG AAGCTCTGCA GTGCGTGTAA GATAGAGGTG AACCCTGAAG ACAGAGATGC AGAGGCACGT GTGAATGCTG TAAAAGGACT CACATCCGTG TGTGAGACTC TTACTCAGAA AAGGGCTAGT GATCCTGAAA ACGATGACCT GTCTCTTTTT CTTCTTATCA AGACTGAAGT GATGGATACT TTACTGAAAG CTCTTGATGA CTATTCAGTT GATAACCGAG GTGATGTAGG TTCTTGGGTT CGTGAAGCTG CAGTCCATGG CCTTGAGAAG TGTACATATA TCCTCTGTAA GAAAATCGGA ACAAATTCAG AGGGTGATCA TAACAATGAT ACGTCCTCAC TTTTCGATTC AAATCTTGCG ACCCGTCTAA TTGGAGGTAT TGTGAAGCAA GGAGTGGAGA AAATGGATAA ACTAAGAGAA ACAGCTGCGA AGGTTCTTCA ACGGATTTTG TATCACAAAT CTGTTTCCGT CCCTCATATA CCTCATAGAG AAAAACTGGA AGAAATTCTT CCCAACAAGG CAAGCTTACA GTGGGCGGTT CCGGCTTTCT CTTTCCCACG TTTTGTGCAG CTATTAAAAC TCCGTTGCTA CAGCAAAGAG GTGATGTCTG GATTAGTAAT TTCTATTGGA GGATTACAAG ATTCACTTAG AAAGGCTTCT CTCGTTGCAT TGTTGGAGTA TATGAGGGAA GGTGAAGCTA AAGACCCTAA AGAACAACAA TCCAGAGAGT CTGCACTGGG AGATGACATT CTCTGGATAC TTCAAGAGTA CAAGAAATGT GACAGAGTTA TGGTACCCTG TCTACAGACA ATTGAGATCC TCTTCAGCAG CAAGATCTTT CTGAATCTAG AGTCTTATAC GTTGAGTTTC TACGCGGGTG CCATGGATTC TCTAGCCATC GAACTAAGAG CTTCTAAGGA TTTCACAAAG TTAAAAGCAG GCCTTGCAAT ACTTGGATAT ATCGCTTCAG TCTCACATCC AATCAGCACA AAAGCATTCT CTCAGCTTCT ATCATTCCTT GGCCACCGAT ACCCAATGAT CCGAAAGGCG GCAGCTGAAC AAGTCTATCT TGCGCTACTT CAAAACGGAA TCTTAGTGAC AGAGGAGAAG ATGGAGAAAG TTATAGAGAT AATTTCAGAA TCTTGTTGGG AAGCAGACAT GGAAACGACT AAGAGTCAGA GGTTAGAATT GTGCGAATTG GCTGGTTTAG ACCATGAAGT AGTGTTCAAG ACAAGAAACA GATTGGCGAC TAGGGATATA GCCGGGAATG AAACGACTGC GTCTGACGAG AACGCGTCTT ACTCTTCCTT GGTCGATTCC TCTGGCTTTT GATTTCACGC TTTGTCCTTG AAT |
| Length | 3813 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 18922405.. 18928432 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G60740.1 |
| Description | ARM repeat superfamily protein |
| TAIR curator summary | Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization. |
| Alias | [CHO][EMB133][TFC D][TTN1][CHAMPIGNON][EMBRYO DEFECTIVE 133][TUBULIN FOLDING COFACTOR D][TITAN 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.82843 |
Ahg916244 | nuclear pore anchor |
| 5.38516 |
Ahg474768 | |
| 9.59166 |
Ahg312653 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 12.2474 |
Ahg497264 | Protein of unknown function (DUF803) |
| 13.8564 |
Ahg484970 | Ribonuclease P protein subunit P38-related |
| 15.3623 |
Ahg898803 | eukaryotic translation initiation factor 3C |
| 16.1245 |
Ahg903991 | Glycosyl hydrolase family 85 |
| 17.0294 |
Ahg918924 | importin alpha isoform 6 |
| 17.9444 |
Ahg488925 | nucleoporin-related |
| 19.2614 |
Ahg941479 | RAN GTPase activating protein 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|