Detail



ID : Ahg920975

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|920975|scaffold_102256.1
Sequence
TTTTTTTTCC TCATCTTGCA ACGATGGCAG CGAAGAAGAT CATCCTCAAG AGCTCCGACG GTGAATCCTT CGAGATCGAT GAAGCCGTCG CGGTCGAGTC CCAGACGATT AAGCACATGA TCGAGGACGA CTGCGCCGAT AACGGAATTC CGCTTCCCAA TGTTACTGGA GCCATCCTTG CGAAGGTTAT TGAGTACTGC AAGAAGCACG TTGAAGCCGC GGCTGAGTCT GGCGGAGACG AGGATTTTTG TGGTTCCACC GAGAACGATG AACTCAAGGC ATGGGACAGC GACTTCGTCA AAGTTGATCA GCCTACACTC TTCGATCTCA TCCTGGCTGC GAACTATTTG AACATCAGTG GACTTCTTGA CCTAACGTGC AAGGCCGTGG CTGATATGAT GAGAGGAAAA ACTCCAGAGC AGATGCGTGA GCACTTCAAC ATCAAGAACG ATTACACACC TGAGGAAGAG GAGGAGGTTC GCAATGAGAA CAAGTGGGCG TTCGAGTGAT TGGATTGGAA TCGGTGTTT 
Length529
Protein Sequence
Protein Residue
Map Locationscaffold_1: 8205508.. 8206200
Download Sequence
A.thaliana
AGI-codeAT2G25700.1
DescriptionSKP1-like 3
TAIR curator summaryE3 ubiquitin ligase SCF complex subunit SKP1/ASK1 (At3), putative, E3 ubiquitin ligase; similar to fimbriata-associated protein fap1 GI:2673868 from (Antirrhinum majus. Interacts with F-box proteins.
Alias[ASK3][SK3][SKP1-like 3]
Gene coexpression
MR
MR Locus Description
5.83095 Ahg488888 Protein of unknown function DUF92, transmembrane
17.4069 Ahg927706 Flavodoxin family protein
35.6651 Ahg475143 pentatricopeptide repeat 336
39.3065 Ahg496352 Exostosin family protein
40.1248 Ahg496876 Nucleotide-diphospho-sugar transferases superfamily protein
41.5331 Ahg476787 golgi nucleotide sugar transporter 3
45.2659 Ahg495143 translocase inner membrane subunit 8
60 Ahg492906 Cyclin family protein
66.5432 Ahg942359 Mitochondrial inner membrane translocase complex, subunit Tim44-related protein
72.8492 Ahg478696 Plant protein of unknown function (DUF827)
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression