Detail



ID : Ahg921188

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|921188|scaffold_102469.1
Sequence
TTTCCTGCAA AATTCCGATC GCCATGGATG ATGGAGCTGT TGAGATACGT GAAGAGCAAC GTCGATTGAT CGTGGCCCAG CAGCAACCAC CATGTATGGC TCGTGAACAA GACCAGTACA TGCCAATCGC AAACGTCATA AGAATCATGC GTAAAATCTT ACCGTCGCAC GCTAAAATCT CTGACGACGC CAAAGAAACG ATTCAAGAAT GTGTCTCCGA GTACATAAGC TTCGTGACCG GTGAAGCCAA CGAGCGTTGC CAACGTGAGC AACGTAAGAC CATAACTGCT GAAGATATCC TTTGGGCTAT GAGCAAGCTT GGGTTCGATA ACTACGTGGA TCCCCTCACC GTGTTTATTA ACCGGTACCG TGAGATAGAG ACCGATCGTG GGTCGGCACT TAGAGGTGAG CCACCGTCGT TGAGACAGGC CTATGGAGGA AATGGTATTG GGTTTCACGG CCCACCACAT GGCCCATCTC ATGGCCTACC TCCTCCTGGT CCTTATGGTT ATGGTATGTT GGACCAATCC ATGGTTATGG GAGATGGTCG GTTCTACCAA AACGGGTCGT CGGGTCAGGA CGAATCAAGT GCTGGTGGTG GCTATTCGTC TTCCATTAAC GGAATGCCGG CGTATGACCA ATATGGTCAG TATAAGTGAA GATGGAATTA TTCTTCATT 
Length679
Protein Sequence
Protein Residue
Map Locationscaffold_1: 9093306.. 9093984
Download Sequence
A.thaliana
AGI-codeAT1G21970.1
DescriptionHistone superfamily protein
TAIR curator summaryTranscriptional activator of genes required for both embryo maturation and cellular differentiation. Sequence is similar to HAP3 subunit of the CCAAT-box binding factor. HAP3 subunit is divided into three domains: an amino-terminal A domain, a central B domain, and a carboxyl-terminal C domain. LEC1 shared high similarity with other HAP3 homologs only in central, B domain. LEC1 is required for the specification of cotyledon identity and the completion of embryo maturation. It was sufficient to induce embryogenic programs in vegetative cells, suggesting that LEC1 is a major embryonic regulator that mediates the switch between embryo and vegetative development. Mutants are desiccation intolerant, have trichomes on cotyledons and exhibit precocious meristem activation. Levels of the ABI3 and FUS3 transcripts were significantly reduced in developing siliques of the lec1-1 mutants, indicating that LEC1 down-regulates FUS3 and ABI3.When LEC1 is overexpressed from an inducible promoter, the expression of numerous genes involved in fatty acid biosynthesis is increased suggesting a role in positive regulation of FA biosynthesis.
Alias[AtLEC1][EMB 212][EMB212][LEC1][NF-YB9][EMBRYO DEFECTIVE 212][LEAFY COTYLEDON 1][NUCLEAR FACTOR Y, SUBUNIT B9]
Gene coexpression
MR
MR Locus Description
0 Ahg921186 Histone superfamily protein
3.31662 Ahg891384
20.9762 Ahg895457
27.7128 Ahg949952 DNA replication protein-related
30.5941 Ahg940881 Protein of unknown function (DUF 3339)
36.4692 Ahg948846 WRKY DNA-binding protein 49
36.4692 Ahg952633 WRKY DNA-binding protein 49
37.7359 Ahg337343
47.1169 Ahg915034
47.9062 Ahg948576 F-box/RNI-like/FBD-like domains-containing protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression