| Annotation |
|---|
| Description | jgi|Araly1|928022|scaffold_300479.1 |
| Sequence |
TCTTACCCTG AGTGAAAGCA ATGGCTTACG GTGGTCCAAT GAATCCACCG GCTTTGAGTG GCCCAGTTTC CGGGTCTGCT AATCTGAAGC AAGTGAAATT GGAGAGAGAA AGCGAGCTCA GGATCGAAGT CTCTGAAGAG CCTCTCAGAC TCCGTGTCGT GAACGGAACG GCTGAGATTT TTGGCTCTGA ACTGCCTCCT GAAATATGGC GTACGTTCCC TCCTCGCATG AAATTTGCGG TTTTCACTTG GTATGGAGCG ACAATTGAGA TGGATGGTGT CACGGAAACT GACTATACGG CAGATGAGAC ACCGATGGTC AGCTACATTA ATGTGCATGC CATACTAGAT GCAAGGAGAC GTTTTGCCAA AGCTTCCACA TCCAATGATC CAGAATCTTC TCAGGGACCT CGGGTTATTG TAGTAGGGCC TACGGATTCC GGGAAGAGCA CATTGACAAA GATGCTTCTT AGTTGGGCAG CTAAACAGGG ATGGAGACCT ACATTTGTAG ACCTTGATGT TGGCCAAGGC TCGATTACAA TACCAGGATG TATTGCTGCT GCCCCTATTG AAATGCCACT GGATCCAGTT GAAGGGTTTC CTCTTGATAT GGCCCTTGTG TACTACTGCG GCCATGCATC ACCAAATATC AACGTTGAAC TGTACAAAGC TCTGGTGAAA GAGCTGGCTC AAGTTCTGGA GAGACAGTTT GTCGGAAACC CTGAATCTCG AGCTGCTGGA ATGGTGATCA ACACAATGGG ATGGATCGAG GGTATTGGTT ATGAGCTGCT TCTCCACGCA ATAGACACAT TCAATGCCTC GGTTGTACTT GTATTGGGTC AGGAAAAACT CTTCAGCAGG CTTAAAGATG TGCTGAGAAG TAAGAGTAAT GTCGACGTCG TGAAACTTCA CAAGTCTGGT GGAGTTGTAG CCAGGGTCAA AGAGGTCCGT AAAAGATCGA GGAATTTTAA GATTCAGGAA TATTTTTACG GTTTATCGAA AGAACTATCT CCGTATGCCA ATACATCAAG TTTCAGTGAT CTGCAAGTGT TCCGAATTGG TGGTGGACCA CAAGCGCCAA AGTCAGCTCT TCCAGCCGGG TCTACCTCGG TTTCAAATCC ATTGCGGGTG ACGCCTGTAA ATATCGATGA TCGGGATCTG CTGCATTCTG TTCTCGCTGT CTCGTACGCA GAAGAACCAG ACCAGATCAT CTCAAGCAAT GTTTCTGGGT TTGTGTATGT GACGGAAGTT AATGTGCAGA AGAAGAAGAT AACGTATTTA GCACCATCGC CTGGGACATT ACCTAGCAAG TTGTTGGTCG CTGGATCATT GACATGGCTT GAGTCAGTAT GATTTATTTA GAGAAGAGAG GA |
| Length | 1372 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 1527792.. 1530191 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G04680.1 |
| Description | CLP-similar protein 3 |
| TAIR curator summary | Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression. |
| Alias | [CLPS3][CLP-similar protein 3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 10.9087 |
Ahg890636 | |
| 14.5945 |
Ahg494464 | RNAse THREE-like protein 3 |
| 17.4356 |
Ahg485863 | histone acetyltransferase of the GNAT family 1 |
| 21.5407 |
Ahg477514 | Eukaryotic aspartyl protease family protein |
| 26.2298 |
Ahg898458 | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein |
| 36.2491 |
Ahg478831 | |
| 37.3095 |
Ahg341139 | demeter-like 2 |
| 39.4968 |
Ahg480540 | RING/FYVE/PHD zinc finger superfamily protein |
| 40.694 |
Ahg339776 | calcium-dependent protein kinase 29 |
| 44.4297 |
Ahg486820 | TIC-like |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|