Detail



ID : Ahg929884

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|929884|scaffold_302341.1
Sequence
TCGAACAGAT CTGAAAAATA ATGCCGTGTT CTAAACTTTC GAATTTGGCA CTCTCTTTCG ATTCCGATGG GCTGCGTCCT CCAGAAACGC CGTTCAGCCG CTGCGTTATA GTCGTCCGTC GATGTTCAGG CCAATGGAGC CGATCATTTT CTCTATTCGC GGAGAGTCAT CGTTCATCGT CGATGTCACC CATTTTATCG TTGGCTGGTG TATCCCATCA GAATAACTAC GTAAGGCCTG TCCTGACAAT AGAATCATTG CTTGTAATTC GAAAATGGAA GGTGAAGTTG ACTCTGTCAG CTGCACTTAT CTCTTGTTGT TGCATTTATA AATAAACTCC TTACGAAAAA TTATAT 
Length356
Protein Sequence
Protein Residue
Map Locationscaffold_3: 8091676.. 8092534
Download Sequence
A.thaliana
AGI-codeAT3G20475.1
DescriptionMUTS-homologue 5
TAIR curator summaryEncodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers.
Alias[ATMSH5][MSH5][MUTS-HOMOLOGUE 5][MUTS-homologue 5]
Gene coexpression
MR
MR Locus Description
2 Virus1072
3.16228 Ahg887495 phloem protein 2-A6
3.4641 Virus3877
4.24264 Ahg919650
4.89898 Ahg949006
6.48074 Ahg936029 F-box family protein
6.48074 Ahg936026 F-box family protein
9.16515 Ahg907761 Arp2/3 complex, 34 kD subunit p34-Arc
13.0384 Ahg950308 F-box/RNI-like/FBD-like domains-containing protein
13.0384 Ahg947981 transcriptional factor B3 family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression