Detail



ID : Ahg930033

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|930033|scaffold_302490.1
Sequence
TTTGACTCAA AAAGAAGAAA ATGAATTCTA ACAACTGGCT TGGCTTTCCT CTTTCACCAA ACAACTCTTC TTTGCCTCCT CATGAATACA ACCTTGGCTT GGTCAGCGAC CATATGGACA ACCCTTTTCA AACACAAGAG TGGAATATGA TCAATCCACA CGGTGGAGGA GGAGGTGAAG GAGGAGAGGT TCCAAAAGTG GCCGATTTTC TTGGTGTGAG CAAACCGGAC GAAAACCAAT CCAACCACCT AGTAGCTTAC AACGACTCAG ATTACTACTT CCATACCAAT AGCTTGATGC CTACCGTCCA ATCAAACGAT GTCGTTGTAG CAGCTTGTGA CTCCAACACT CCTAACAACA GTAGCTATCA TGAGCTTCAA GAGAGTGCTC ACAATCTACA GTCACTCACT TTGTCCATGG GGACCACCGC TGGTAACAAC GCTGTAGACA AAGCTTCACC GTCCGAGACC ACCGGGGATA ACACTAGCGG TGGAGTACTA GCCGTTGCTG AGACGGCCAC GCCGAGACGT GCATTGGACA CTTTCGGGCA GCGAACCTCG ATCTATCGTG GTGTCACAAG ACATCGATGG ACGGGTCGCT ATGAGGCTCA TCTATGGGAT AATAGTTGTA GAAGGGAAGG CCAGTCTAGG AAAGGAAGAC AAGTATACTT GGGTGGATAT GACAAAGAAG ATAAAGCCGC AAGATCATAT GATCTAGCTG CACTTAAGTA CTGGGGTCCT TCGACTACTA CTAATTTCCC CATTACAAAC TACGAGAAAG AAGTAGAGGA AATGAAGCAC ATGACGAGAC AAGAGTTCGT GGCTGCCATT AGAAGGAAAA GTAGTGGCTT TTCCAGAGGC GCTTCGATGT ATCGAGGAGT TACAAGGCAT CACCAACATG GAAGATGGCA AGCAAGGATC GGCCGAGTCG CCGGAAACAA AGACCTCTAC TTGGGAACTT TTAGCACTGA GGAAGAAGCA GCAGAAGCTT ACGATATAGC TGCAATAAAG TTCAGAGGAC TTAATGCAGT GACCAACTTT GAAATCAATA GGTATGACGT CAAAGCCATC CTAGAGAGCA GCACTCTTCC CATAGGAGGA GGCGCAGCTA AACGGCTCAA AGAAGCTCAA GCTCTGGAGT CTTCAAGGAA ACGTGAGGCG GAGATGATAG CCCTTGGTTC AAGTTTCCAG TACGGGGTTG GCTCGAGCAC AGGCTCTGGC TCCAGCTCAT CAAGGCTTCA GCTTCAACCA TACCCTCTAA GCATTCAGCA ACCTTTAGAG CCTTTTCTAT CTCTTCAGAA CAATGACATC TCTCATTACA GCAACAACAA TGCTCATGAT TCCTCCTCTT TTAATCACCA TAGCTATATC CAGACACAGC TTCATCTCCA CCAACAGACC AACAATTACT TGCAGCAACA ATCGAGCCAG AACTCGCAGC AGCTCTACAA CGCGTATCTT CATAGCAATC CGGCTCTTCT CCATGGCCTT GTCTCTACCT CTATCGTTGA CAACAATAAT AACAATGGAG GTTCTAGTGG GAGCTACAAC ACTGCAGCGT TTCTTGGGAA CCACGGTATT GGTATTGGGT CGAGCTCGAC TGTTGGATCT GCTGAGGAGT TTCCAACCGT TAAAACAGAT TACGATATGC CTTCCAGTGA TGGAACCGGA GGGTATAGTG GTTGGACCGG TGAGTCTGTT CAGGGGTCAA ATCCTGGTGG TGTTTTCACT ATGTGGAATG AGTAACATGG ATCTCGATCT TTCTTG 
Length1766
Protein Sequence
Protein Residue
Map Locationscaffold_3: 8672152.. 8674798
Download Sequence
A.thaliana
AGI-codeAT3G20840.1
DescriptionIntegrase-type DNA-binding superfamily protein
TAIR curator summaryEncodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.
Alias[PLT1][PLETHORA 1]
Gene coexpression
MR
MR Locus Description
2.82843 Ahg947612
6.63325 Ahg356074 expansin A24
10.0995 Ahg894454 Xanthine/uracil permease family protein
10.198 Ahg941436 isopentenyltransferase 5
10.7703 Ahg944327 zinc finger (C2H2 type) family protein
11.225 Ahg931324
14.6629 Ahg947152
15.2315 Ahg938557
17.8885 Ahg906766
18.7083 Ahg906126
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression