| Annotation |
|---|
| Description | jgi|Araly1|930459|scaffold_302916.1 |
| Sequence |
GTCGCTCACA AGTCACCACC ATGCAACACT CTTTTCGTTC TGATCTTCTT CCGACGAAGA CTTCTCCTCA TTCTCATTTG CTTCCACAAA TGAAAAATGC AAATATTTCT CGACGACTTC TCATTAATCC TTTCAAGATA CCAACACTTC CTGATCTCAT TTCTCCGGTT ACGTCGCCGG TTAAGCTCAA ACCAACGTAC CCGAACTTAA ACCCTCTTCA GAAGCTAGCG GCTACGATGC TTGACAAGAT TGAGTCCTCT ATCGTTACAC CTATGGAGCA GAATCGCCCG CTTCCTAAAC CGACTGATCC GGCGATACAA CTGTCCGGTA ACTTCGCTCC GGTTCATGAA TGTCCGGTTC AGACCGGTTT AGAAATCCTT GGTCAGATTC CTTCTTGTCT AAAAGGAGTT TACATCCGTA ACGGTGCTAA CCCTAAGTTT CCGCCGTTAG CCGGACATCA TTTATTTGAC GGTGACGGAA TGATTCACGC CGTTAGTATC GGTTCTGATA ACCAGGTTAG TTACAGCTGC CGGTACACTA AAACAAACCG GCTTATTCAA GAAACCGAGC TTGGACGATC GGTTTTTCCT AAACCAATCG GCGAGCTTCA CGGCCATTCC GGTCTAGCTC GGCTCGCTCT CTTCTCGGCT CGAGCTGGGA TCGGTCTCGT TGACGGGACA CGTGGCATGG GCGTAGCTAA CGCCGGCGTG GTTTACTTTA ACGGGAGGTT ATTGGCCATG TCAGAAGATG ATCTTCCTTA CCAAGTGAAG ATCGACGGTC AAGGAGATCT TGAGACGATC GGACGGTTCG GATTCGATGA TCAGATCGAC TGTTCTGTGA TAGCGCATCC TAAGGTGGAC CCAACCACAG GAGATCTCCA TACTCTGAGC TACAACGTTT TGAAGAAACC TCATCTCAGG TATCTTAAAT TCGACACGTG CGGGAAAAAG ACACGTGACG TGGAGATCAC GCTCCCTGAA CCAACGATGA TTCATGATTT CGCGATAACC GAGAATTTCG TCGTTATACC GGATCAACAA ATGGTATTCA AATTATCCGA AATGATTCGG GGCGGGTCAC CGGTTATCTA CGTTAAAGAG AAAATGTCGA GATTTGGAGT TTTGTCGAAG CAGGATCCGA CCGGGTCCGG TATAAATTGG GTTGATGTAC CGGATTGTTT CTGTTTCCAT TTATGGAATG CGTGGGAAGA GCGAACCGAA GATGGAGATC TGGTTATCGT CGTAATCGGG TCGTGTATGA GCCCGCCCGA TACGATCTTT AGTGAATCAG GAGAACCGAC CCGGATTGAA TTAAGCGAGA TACGGTTAAA CATGCGAACA AAAGAATCGA ACCGGAAGGT TATCGTAACC GGGATGAATT TAGAAGCTGG TCATATAAAC CCGAGTTTCG TGGGCCTAAA AAACCGGTTC GTTTACATAG CAATAGCCGA TCCCTGGCCC AAATGCAGTG GCATTGCGAA GGTAGATATA GAAAACGGCA CCGTTTCACA GTTTAATTAC GGACCAGGCC GGTTCGGTGG GGAACCGTAC TTTGTACCGG AGGGAGAAGG AGAAGAAGAC AAAGGTTATG TGATGGGGTT TGTGAGAGAC GAAGAGAAAG ACGAGTCGGA GTTTGTGGTG GTCGACCCGA CGGATATGAA GCAAGTCGCG GCGGTGCGCC TGCCGGAGAG GGTACCTTAC GGTTTCCATG GAACGTTCGT GAGCGAGAAT CAGTTAAAGG AACAAGTTTT CTGACTTAGG AGTGTATATT CATA |
| Length | 1774 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 10562392.. 10563497 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G24220.1 |
| Description | nine-cis-epoxycarotenoid dioxygenase 6 |
| TAIR curator summary | A member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition. |
| Alias | [ATNCED6][NCED6][NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6][nine-cis-epoxycarotenoid dioxygenase 6] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 12 |
Ahg490718 | other RNA |
| 15.1987 |
Ahg919270 | Pectin lyase-like superfamily protein |
| 26.9815 |
Ahg947612 | |
| 35.1568 |
Ahg931324 | |
| 37.47 |
Ahg494580 | RmlC-like cupins superfamily protein |
| 39.598 |
Ahg354756 | Galactose oxidase/kelch repeat superfamily protein |
| 51.3809 |
Ahg942300 | |
| 54.3139 |
Ahg338146 | KNOX/ELK homeobox transcription factor |
| 54.7723 |
Ahg336994 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| 56.8155 |
Ahg942130 | Leucine-rich repeat (LRR) family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|